Curated BLAST for Genomes

 

Curated BLAST

Searching in Planktomarina temperata RCA23 (GCF_000738435.1)

Found 23 curated entries in PaperBLAST's database that match '4.3.1.18' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Planktomarina temperata RCA23, or try another query

RCA23_RS12505 RCA23_c24520 WP_044051560.1: D-cysteine desulfhydrase
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

41% id,
95% cov

RCA23_RS10315 RCA23_c20180 WP_044050245.1: threonine/serine dehydratase
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

39% id,
96% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

35% id,
98% cov

SRR_ORYSJ / Q7XSN8: Serine racemase; D-serine dehydratase; D-serine ammonia-lyase; L-serine dehydratase; L-serine ammonia-lyase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Oryza sativa

36% id,
94% cov

More...

RCA23_RS02360 RCA23_c04630 WP_044048880.1: threonine/serine dehydratase
is similar to:
PaperBLAST

SRR_ARATH / Q2PGG3: Serine racemase; AtSR; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Arabidopsis thaliana

33% id,
92% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

30% id,
95% cov

SRR_RAT / Q76EQ0: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Rattus norvegicus

30% id,
93% cov

More...

ilvA RCA23_RS15620 RCA23_c30650 WP_044051092.1: threonine ammonia-lyase IlvA
is similar to:
PaperBLAST

SRR_SCHPO / O59791: Serine racemase; D-serine ammonia-lyase; D-serine dehydratase; L-serine ammonia-lyase; L-serine dehydratase; EC 5.1.1.18; EC 4.3.1.18; EC 4.3.1.17 from Schizosaccharomyces pombe

30% id,
95% cov

Q54HH2: D-Serine ammonia-lyase (EC 4.3.1.18) from Dictyostelium discoideum

27% id,
95% cov

RCA23_RS06020 RCA23_c11780 WP_081870911.1: D-TA family PLP-dependent enzyme
is similar to:
PaperBLAST

DSD1_DICDI / Q54XE5: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Dictyostelium discoideum

25% id,
96% cov

DSD1_CHICK / A0A8V1ABE9: D-serine dehydratase; D-serine deaminase; EC 4.3.1.18 from Gallus gallus

36% id,
42% cov

DSD1_SCHPO / Q9US35: D-serine dehydratase; D-serine deaminase; DSD; EC 4.3.1.18 from Schizosaccharomyces pombe

25% id,
43% cov

RCA23_RS05540 RCA23_c10860 WP_044049470.1: cysteine synthase A
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii

24% id,
61% cov

Q4A041: D-Serine ammonia-lyase (EC 4.3.1.18) from Staphylococcus saprophyticus

21% id,
67% cov

PfGW456L13_3648: D-serine ammonia-lyase (EC 4.3.1.18) from Pseudomonas fluorescens

24% id,
57% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2590776-2591867 (frame -1) on NZ_CP003984.1 Planktomarina temperata RCA23 chromosome, complete genome
is similar to:
PaperBLAST

O57809: L-serine ammonia-lyase (EC 4.3.1.17); D-Serine ammonia-lyase (EC 4.3.1.18) from Pyrococcus horikoshii
Also see hits to annotated proteins above

40% id,
97% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory