Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeacidiphilus oryzae TH49 (GCF_000744815.1)

Found 13 curated entries in PaperBLAST's database that match '1.1.1.203' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Phaeacidiphilus oryzae TH49, or try another query

BS73_RS12270 WP_037571724.1: NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

D6Y7Y8: uronate dehydrogenase (EC 1.1.1.203) from Thermobispora bispora

56% id,
94% cov

Pf1N1B4_4511: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens

48% id,
94% cov

URODH_PSEPK / Q88NN6: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas putida
PP_1171: Uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida
Q88NN6: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas putida

47% id,
95% cov

More...

rfbB BS73_RS30205 WP_051941148.1: dTDP-glucose 4,6-dehydratase
is similar to:
PaperBLAST

Pf1N1B4_4511: D-galacturonate dehydrogenase (EC 1.1.1.203) from Pseudomonas fluorescens

29% id,
62% cov

URODH_PSESM / Q888H1: Uronate dehydrogenase; D-galacturonate dehydrogenase; D-glucuronate dehydrogenase; Hexuronate dehydrogenase; EC 1.1.1.203 from Pseudomonas syringae
udh / Q888H1: uronic acid dehydrogenase subunit (EC 1.1.1.203) from Pseudomonas syringae
Q888H1: uronate dehydrogenase (EC 1.1.1.203) from Pseudomonas syringae

29% id,
61% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory