Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeacidiphilus oryzae TH49 (GCF_000744815.1)

Found 25 curated entries in PaperBLAST's database that match '2.4.2.2' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 0 relevant proteins in Phaeacidiphilus oryzae TH49, or try another query

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

4449325-4451001 (frame +1) on NZ_JQMQ01000005.1 Phaeacidiphilus oryzae TH49 BS73DRAFT_unitig_14_quiver.5_C, whole genome shotgun sequence
is similar to:
PaperBLAST

Q5SHF9: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

51% id,
79% cov

Q72HS4: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Thermus thermophilus

51% id,
79% cov

A0A0D1XZI7: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Aneurinibacillus migulanus

53% id,
75% cov

More...

4449594-4451021 (frame +3) on NZ_JQMQ01000005.1 Phaeacidiphilus oryzae TH49 BS73DRAFT_unitig_14_quiver.5_C, whole genome shotgun sequence
is similar to:
PaperBLAST

A0A0D1XZI7: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Aneurinibacillus migulanus

34% id,
26% cov

A0A0E2M090: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Lacticaseibacillus paracasei

42% id,
19% cov

A0A178U4P5: pyrimidine-nucleoside phosphorylase (EC 2.4.2.2) from Parageobacillus thermoglucosidasius

35% id,
23% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory