Curated BLAST for Genomes

 

Curated BLAST

Searching in Phaeacidiphilus oryzae TH49 (GCF_000744815.1)

Found 1 curated entries in PaperBLAST's database that match 'acetohydroxyacid synthase subunit B' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Phaeacidiphilus oryzae TH49, or try another query

BS73_RS14735 WP_037572586.1: acetolactate synthase large subunit
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

47% id,
99% cov

gcl BS73_RS29625 WP_037577557.1: glyoxylate carboligase
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

33% id,
91% cov

BS73_RS27900 WP_037577100.1: thiamine pyrophosphate-requiring protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

30% id,
96% cov

BS73_RS33600 WP_037582416.1: pyruvate dehydrogenase
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

28% id,
92% cov

BS73_RS25220 WP_037576212.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

27% id,
91% cov

iolD BS73_RS11410 WP_037571522.1: 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

26% id,
92% cov

BS73_RS10485 WP_037579002.1: thiamine pyrophosphate-binding protein
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

22% id,
90% cov

BS73_RS31390 WP_084704496.1: thiamine pyrophosphate-dependent enzyme
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

31% id,
48% cov

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator

35% id,
27% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 3 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

5437385-5439391 (frame -2) on NZ_JQMQ01000005.1 Phaeacidiphilus oryzae TH49 BS73DRAFT_unitig_14_quiver.5_C, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

30% id,
100% cov

4847326-4850028 (frame +1) on NZ_JQMQ01000005.1 Phaeacidiphilus oryzae TH49 BS73DRAFT_unitig_14_quiver.5_C, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

26% id,
93% cov

1381967-1383766 (frame +2) on NZ_JQMQ01000005.1 Phaeacidiphilus oryzae TH49 BS73DRAFT_unitig_14_quiver.5_C, whole genome shotgun sequence
is similar to:
PaperBLAST

ilvB / Q0KCU4: acetohydroxyacid synthase subunit B (EC 2.2.1.6) from Cupriavidus necator
Also see hits to annotated proteins above

22% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory