Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia mobilis UQM 1969 (GCF_000745425.1)

Found 51 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 41 distinct sequences.

Running ublast with E ≤ 0.01

Found 21 relevant proteins in Beijerinckia mobilis UQM 1969, or try another query

putA DL88_RS04230 WP_034992456.1: bifunctional proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase PutA
is similar to:		 PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 47% id,
98% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 45% id,
97% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 44% id,
96% cov

More...

DL88_RS01440 WP_034990867.1: glutamate synthase subunit beta
is similar to:		 PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

 26% id,
80% cov

DL88_RS15095 WP_051956041.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

 24% id,
62% cov

DL88_RS03165 WP_034991544.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 30% id,
46% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 29% id,
43% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 30% id,
42% cov

More...

DL88_RS17100 WP_051956125.1: 2-hydroxymuconic semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 30% id,
45% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 29% id,
45% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 30% id,
42% cov

More...

DL88_RS01285 WP_034990821.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

Q5JFG7: proline dehydrogenase (EC 1.5.5.2) from Thermococcus kodakarensis

 24% id,
55% cov

Q8U1G2: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus furiosus

 23% id,
55% cov

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

 25% id,
36% cov

DL88_RS04160 WP_034992423.1: aldehyde dehydrogenase family protein
is similar to:		 PaperBLAST

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 30% id,
44% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 28% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 28% id,
44% cov

More...

aldA DL88_RS10695 WP_034995716.1: aldehyde dehydrogenase
is similar to:		 PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 29% id,
44% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 29% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 29% id,
44% cov

More...

DL88_RS11265 WP_034995992.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 29% id,
44% cov

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 28% id,
45% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 27% id,
44% cov

More...

DL88_RS00070 WP_034990558.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 28% id,
43% cov

AZOBR_RS23695: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Azospirillum brasilense

 29% id,
34% cov

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

 28% id,
36% cov

More...

DL88_RS16620 WP_051956105.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 27% id,
44% cov

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

 28% id,
38% cov

AZOBR_RS23695: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Azospirillum brasilense

 27% id,
35% cov

More...

DL88_RS16605 WP_034998705.1: CoA-acylating methylmalonate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 27% id,
43% cov

AZOBR_RS23695: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Azospirillum brasilense

 30% id,
37% cov

Ac3H11_2850: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Acidovorax sp.

 30% id,
34% cov

More...

DL88_RS17870 WP_034999267.1: NADP-dependent glyceraldehyde-3-phosphate dehydrogenase
is similar to:		 PaperBLAST

Sama_2676: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella amazonensis

 24% id,
45% cov

Shewana3_0819: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Shewanella sp.

 24% id,
45% cov

Psest_3079: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas stutzeri

 25% id,
43% cov

More...

DL88_RS17425 WP_034999086.1: NAD-dependent succinate-semialdehyde dehydrogenase
is similar to:		 PaperBLAST

PGA1_c11750: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Phaeobacter inhibens

 30% id,
34% cov

HP15_2688: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Marinobacter adhaerens

 29% id,
33% cov

Ac3H11_2850: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Acidovorax sp.

 29% id,
33% cov

More...

DL88_RS15100 WP_034997918.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

 33% id,
19% cov

DL88_RS13385 WP_034996914.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

O59445: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

 41% id,
13% cov

DL88_RS04170 WP_034992428.1: FAD-dependent oxidoreductase
is similar to:		 PaperBLAST

O59089: proline dehydrogenase (EC 1.5.5.2) from Pyrococcus horikoshii

 50% id,
9% cov

DL88_RS04370 WP_084704927.1: GMC oxidoreductase
is similar to:		 PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

 47% id,
10% cov

DL88_RS16700 WP_034998732.1: GMC family oxidoreductase
is similar to:		 PaperBLAST

O59088: proline dehydrogenase (subunit 2/2) (EC 1.5.5.2) from Pyrococcus horikoshii

 49% id,
7% cov

lpdA DL88_RS18465 WP_034999764.1: dihydrolipoyl dehydrogenase
is similar to:		 PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

 44% id,
7% cov

DL88_RS17240 WP_034999029.1: CopG family ribbon-helix-helix protein
is similar to:		 PaperBLAST

RR42_RS20125: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Cupriavidus basilensis

 29% id,
5% cov

BWI76_RS10795: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Klebsiella michiganensis

 35% id,
4% cov

AO353_12810: L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) from Pseudomonas fluorescens

 36% id,
3% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 15 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory