Curated BLAST for Genomes

 

Curated BLAST

Searching in Beijerinckia mobilis UQM 1969 (GCF_000745425.1)

Found 2 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthetase%large' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Beijerinckia mobilis UQM 1969, or try another query

carB DL88_RS04925 WP_034992740.1: carbamoyl-phosphate synthase large subunit
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

47% id,
97% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

66% id,
69% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

33% id,
36% cov

DL88_RS05410 WP_034992903.1: acetyl/propionyl/methylcrotonyl-CoA carboxylase subunit alpha
is similar to:
PaperBLAST

pyrAB / P25994: pyrimidine-specific carbamoyl-phosphate synthetase (large subunit) (EC 6.3.5.5) from Bacillus subtilis

25% id,
40% cov

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

25% id,
33% cov

accC DL88_RS08080 WP_051955741.1: acetyl-CoA carboxylase biotin carboxylase subunit
is similar to:
PaperBLAST

carB / P00968: carbamoyl-phosphate synthetase large subunit (EC 6.3.5.5) from Escherichia coli

22% id,
37% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory