Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanobacterium veterum MK4 (GCF_000745485.1)

Found 24 curated entries in PaperBLAST's database that match '1.1.1.6' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methanobacterium veterum MK4, or try another query

EJ01_RS05790 WP_048081445.1: 3-oxoacyl-ACP reductase family protein
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

37% id,
96% cov

ercA EJ01_RS11120 WP_048082914.1: alcohol dehydrogenase-like regulatory protein ErcA
is similar to:
PaperBLAST

ADH1_GEOTN / A4IP64: Long-chain-alcohol dehydrogenase 1; Alcohol dehydrogenase 1; ADH1; Fatty alcohol oxidoreductase 1; Glycerol dehydrogenase; EC 1.1.1.192; EC 1.1.1.6 from Geobacillus thermodenitrificans

33% id,
91% cov

GLDA_CITFR / P45511: Glycerol dehydrogenase; GDH; GLDH; EC 1.1.1.6 from Citrobacter freundii
dhaD / GB|AAB48844.1: glycerol dehydrogenase; EC 1.1.1.6 from Citrobacter freundii

26% id,
84% cov

A6TGD6: glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae

22% id,
94% cov

More...

EJ01_RS12715 WP_048080798.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

GOLD_LISIN / Q92EU6: NAD-dependent glycerol dehydrogenase; Dha-forming NAD-dependent glycerol dehydrogenase; EC 1.1.1.6 from Listeria innocua

30% id,
97% cov

EJ01_RS06825 WP_048081334.1: NAD(P)-dependent glycerol-1-phosphate dehydrogenase
is similar to:
PaperBLAST

Q8ZKM9: glycerol dehydrogenase (EC 1.1.1.6) from Salmonella enterica

27% id,
92% cov

A6TGD6: glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae

26% id,
92% cov

B2ZPN8: glycerol dehydrogenase (EC 1.1.1.6) from Klebsiella pneumoniae

26% id,
92% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory