Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanobacterium veterum MK4 (GCF_000745485.1)

Found 13 curated entries in PaperBLAST's database that match '1.2.7.5' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methanobacterium veterum MK4, or try another query

EJ01_RS14805 WP_048082491.1: 4Fe-4S binding protein
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

30% id,
92% cov

EJ01_RS14830 WP_048082496.1: 4Fe-4S binding protein
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

34% id,
40% cov

EJ01_RS13655 WP_048080636.1: 4Fe-4S dicluster domain-containing protein
is similar to:
PaperBLAST

B9MQI1: aldehyde ferredoxin oxidoreductase (subunit 1/2) (EC 1.2.7.5); glyceraldehyde-3-phosphate dehydrogenase (ferredoxin) (subunit 1/2) (EC 1.2.7.6) from Caldicellulosiruptor bescii

39% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory