Curated BLAST for Genomes

 

Curated BLAST

Searching in Methanobacterium veterum MK4 (GCF_000745485.1)

Found 29 curated entries in PaperBLAST's database that match 'sorbitol dehydrogenase' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Methanobacterium veterum MK4, or try another query

EJ01_RS05790 WP_048081445.1: 3-oxoacyl-ACP reductase family protein
is similar to:
PaperBLAST

Pf6N2E2_1959: D-sorbitol dehydrogenase (EC 1.1.1.14) from Pseudomonas fluorescens

36% id,
97% cov

GDH_AGRFC / A9CES4: Galactitol 2-dehydrogenase; GDH; Sorbitol dehydrogenase; SorbD; EC 1.1.1.16; EC 1.1.1.- from Agrobacterium fabrum

36% id,
98% cov

6pejA / Q92N06: Structure of sorbitol dehydrogenase from sinorhizobium meliloti 1021 bound to sorbitol

35% id,
97% cov

More...

EJ01_RS12715 WP_048080798.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

GDH_AGRFC / A9CES4: Galactitol 2-dehydrogenase; GDH; Sorbitol dehydrogenase; SorbD; EC 1.1.1.16; EC 1.1.1.- from Agrobacterium fabrum

32% id,
98% cov

PGA1_c13170: Sorbitol dehydrogenase (EC 1.1.1.14) from Phaeobacter inhibens

30% id,
97% cov

BPHYT_RS16120: sorbitol dehydrogenase, D-fructose forming (EC 1.1.1.14) from Burkholderia phytofirmans

30% id,
96% cov

EJ01_RS01405 WP_048080142.1: glutathione-independent formaldehyde dehydrogenase
is similar to:
PaperBLAST

DHSO1_YEAST / P35497: Sorbitol dehydrogenase 1; SDH 1; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.9 from Saccharomyces cerevisiae

29% id,
97% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / AAA22508.1: sorbitol dehydrogenase from Bacillus subtilis

27% id,
94% cov

NAD-SDH / Q9ZR22: D-sorbitol dehydrogenase (EC 1.1.1.14) from Malus domestica

28% id,
84% cov

More...

EJ01_RS05805 WP_269221192.1: NAD(P)-dependent alcohol dehydrogenase
is similar to:
PaperBLAST

1e3jA / O96496: Ketose reductase (sorbitol dehydrogenase) from silverleaf whitefly

28% id,
95% cov

DHSO_BACSU / Q06004: Sorbitol dehydrogenase; SDH; Glucitol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Xylitol dehydrogenase; EC 1.1.1.-; EC 1.1.1.14; EC 1.1.1.9 from Bacillus subtilis
gutB / AAA22508.1: sorbitol dehydrogenase from Bacillus subtilis

28% id,
92% cov

DHSO_HUMAN / Q00796: Sorbitol dehydrogenase; SDH; (R,R)-butanediol dehydrogenase; L-iditol 2-dehydrogenase; Polyol dehydrogenase; Ribitol dehydrogenase; RDH; Xylitol dehydrogenase; XDH; EC 1.1.1.-; EC 1.1.1.4; EC 1.1.1.14; EC 1.1.1.56; EC 1.1.1.9 from Homo sapiens

27% id,
92% cov

More...

EJ01_RS05815 WP_048081450.1: SDR family oxidoreductase
is similar to:
PaperBLAST

GDH_AGRFC / A9CES4: Galactitol 2-dehydrogenase; GDH; Sorbitol dehydrogenase; SorbD; EC 1.1.1.16; EC 1.1.1.- from Agrobacterium fabrum

30% id,
45% cov

PGA1_c13170: Sorbitol dehydrogenase (EC 1.1.1.14) from Phaeobacter inhibens

26% id,
44% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory