Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacter vibrioformis DSM 8776 (GCF_000745975.1)

Found 71 curated entries in PaperBLAST's database that match '2.1.2.1' as complete word(s).

These curated entries have 51 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Desulfobacter vibrioformis DSM 8776, or try another query

glyA Q366_RS19665 WP_035242609.1: serine hydroxymethyltransferase
is similar to:		 PaperBLAST

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae

 61% id,
98% cov

GLYA_METBF / Q46A52: Serine hydroxymethyltransferase; SHMT; Serine methylase; EC 2.1.2.1 from Methanosarcina barkeri
Q46A52: glycine hydroxymethyltransferase (EC 2.1.2.1) from Methanosarcina barkeri

 59% id,
100% cov

A1SUU0: glycine hydroxymethyltransferase (EC 2.1.2.1) from Psychromonas ingrahamii

 59% id,
98% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

110783-112030 (frame +2) on NZ_KN050796.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00005.5, whole genome shotgun sequence
is similar to:		 PaperBLAST

R9YJZ9: glycine hydroxymethyltransferase (EC 2.1.2.1) from Shewanella algae
Also see hits to annotated proteins above

 60% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory