Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacter vibrioformis DSM 8776 (GCF_000745975.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Desulfobacter vibrioformis DSM 8776, or try another query

Q366_RS10275 WP_245619927.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

40% id,
86% cov

cmk Q366_RS04970 WP_035236983.1: (d)CMP kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

31% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory