Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacter vibrioformis DSM 8776 (GCF_000745975.1)

Found 22 curated entries in PaperBLAST's database that match '4.2.1.22' as complete word(s).

These curated entries have 16 distinct sequences.

Running ublast with E ≤ 0.01

Found 6 relevant proteins in Desulfobacter vibrioformis DSM 8776, or try another query

cysK Q366_RS13780 WP_035239961.1: cysteine synthase A
is similar to:		 PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

 41% id,
100% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

 41% id,
99% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

 37% id,
65% cov

More...

cysK Q366_RS18525 WP_035242077.1: cysteine synthase A
is similar to:		 PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

 42% id,
97% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

 37% id,
97% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

 39% id,
66% cov

More...

cysK Q366_RS10715 WP_035238797.1: cysteine synthase A
is similar to:		 PaperBLAST

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

 41% id,
97% cov

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

 37% id,
97% cov

Y1077_MYCTU / P9WP51: Probable cystathionine beta-synthase Rv1077; Beta-thionase; Serine sulfhydrase; EC 4.2.1.22 from Mycobacterium tuberculosis

 39% id,
66% cov

More...

Q366_RS17825 WP_035241718.1: cysteine synthase
is similar to:		 PaperBLAST

F9UT54: cysteine synthase (EC 2.5.1.47); cystathionine beta-synthase (EC 4.2.1.22) from Lactiplantibacillus plantarum

 38% id,
98% cov

cysK / P56067: cystathionine β-synthase (O-acetyl-L-serine) monomer (EC 4.2.1.22; EC 2.5.1.134; EC 2.5.1.47) from Helicobacter pylori

 39% id,
97% cov

CBS_YEAST / P32582: Cystathionine beta-synthase; Beta-thionase; Serine sulfhydrase; Sulfur transfer protein 4; EC 4.2.1.22 from Saccharomyces cerevisiae
CYS4 / P32582: Cys4 (EC 4.2.1.22) from Saccharomyces cerevisiae
P32582: cystathionine beta-synthase (EC 4.2.1.22) from Saccharomyces cerevisiae

 39% id,
64% cov

More...

guaB Q366_RS05000 WP_035236906.1: IMP dehydrogenase
is similar to:		 PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

 28% id,
60% cov

Q366_RS06285 WP_035237382.1: CBS domain-containing protein
is similar to:		 PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus

 30% id,
35% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

143253-144722 (frame +3) on NZ_JQKJ01000004.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00004.4_C, whole genome shotgun sequence
is similar to:		 PaperBLAST

Q5SK23: cystathionine beta-synthase (EC 4.2.1.22) from Thermus thermophilus
Also see hits to annotated proteins above

 29% id,
65% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory