Curated BLAST for Genomes

 

Curated BLAST

Searching in Desulfobacter vibrioformis DSM 8776 (GCF_000745975.1)

Found 1 curated entries in PaperBLAST's database that match 'small subunit of acetolactate synthase' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Desulfobacter vibrioformis DSM 8776, or try another query

ilvN Q366_RS15940 WP_035240747.1: acetolactate synthase small subunit
is similar to:
PaperBLAST

AN4430: small subunit of acetolactate synthase from Emericella nidulans

47% id,
28% cov

ilvN Q366_RS01715 WP_035235674.1: acetolactate synthase small subunit
is similar to:
PaperBLAST

AN4430: small subunit of acetolactate synthase from Emericella nidulans

37% id,
31% cov

ilvN Q366_RS01300 WP_035235593.1: acetolactate synthase small subunit
is similar to:
PaperBLAST

AN4430: small subunit of acetolactate synthase from Emericella nidulans

35% id,
21% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

371633-372154 (frame -3) on NZ_JQKJ01000001.1 Desulfobacter vibrioformis DSM 8776 Q366DRAFT_scaffold00001.1_C, whole genome shotgun sequence
is similar to:
PaperBLAST

AN4430: small subunit of acetolactate synthase from Emericella nidulans
Also see hits to annotated proteins above

36% id,
33% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory