Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocapsa aurea KYG (GCF_000746085.1)

Found 8 curated entries in PaperBLAST's database that match '1.1.1.401' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Methylocapsa aurea KYG, or try another query

phbB DL86_RS05195 WP_036258924.1: acetoacetyl-CoA reductase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

39% id,
95% cov

C785_RS20555 / A0A2E7P978: 2-dehydro-3-deoxy-L-pentonate 4-dehydrogenase (EC 1.1.1.401) from Herbaspirillum sp.

32% id,
96% cov

fabG DL86_RS06380 WP_036259611.1: 3-oxoacyl-[acyl-carrier-protein] reductase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

37% id,
95% cov

DL86_RS12180 WP_036261783.1: 3-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

33% id,
98% cov

C785_RS20555 / A0A2E7P978: 2-dehydro-3-deoxy-L-pentonate 4-dehydrogenase (EC 1.1.1.401) from Herbaspirillum sp.

31% id,
97% cov

DL86_RS03260 WP_036258220.1: SDR family oxidoreductase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

32% id,
95% cov

C785_RS20555 / A0A2E7P978: 2-dehydro-3-deoxy-L-pentonate 4-dehydrogenase (EC 1.1.1.401) from Herbaspirillum sp.

28% id,
96% cov

DL86_RS06500 WP_036259457.1: 3-hydroxybutyrate dehydrogenase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

28% id,
96% cov

DL86_RS00710 WP_202899140.1: SDR family oxidoreductase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

28% id,
92% cov

C785_RS20555 / A0A2E7P978: 2-dehydro-3-deoxy-L-pentonate 4-dehydrogenase (EC 1.1.1.401) from Herbaspirillum sp.

24% id,
91% cov

DL86_RS01025 WP_036257326.1: zinc-dependent alcohol dehydrogenase family protein
is similar to:
PaperBLAST

E1QSX6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Vulcanisaeta distributa

27% id,
95% cov

KDRDH_SULTA / P0DOW0: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; EC 1.1.1.401 from Sulfobacillus thermosulfidooxidans
P0DOW0: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sulfobacillus thermosulfidooxidans

26% id,
72% cov

DL86_RS03865 WP_036258344.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

C785_RS20555 / A0A2E7P978: 2-dehydro-3-deoxy-L-pentonate 4-dehydrogenase (EC 1.1.1.401) from Herbaspirillum sp.

26% id,
88% cov

DL86_RS13605 WP_036262521.1: oxidoreductase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

28% id,
78% cov

DL86_RS08465 WP_036260156.1: SDR family NAD(P)-dependent oxidoreductase
is similar to:
PaperBLAST

KDRDH_SPHSS / Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; L-KDR 4-dehydrogenase; EC 1.1.1.401 from Sphingomonas sp.
Ira5 / Q1NEI6: L-2-keto-3-deoxyrhamnonate 4-dehydrogenase subunit (EC 1.1.1.401) from Sphingomonas sp.
Q1NEI6: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sphingomonas sp.

28% id,
70% cov

DL86_RS03590 WP_036258295.1: S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase
is similar to:
PaperBLAST

KDRDH_SULTA / P0DOW0: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD(+)); 2-keto-3-deoxy-L-rhamnonate dehydrogenase; KDRDH; L-KDR dehydrogenase; EC 1.1.1.401 from Sulfobacillus thermosulfidooxidans
P0DOW0: 2-dehydro-3-deoxy-L-rhamnonate dehydrogenase (NAD+) (EC 1.1.1.401) from Sulfobacillus thermosulfidooxidans

32% id,
32% cov

murD DL86_RS15780 WP_036263448.1: UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
is similar to:
PaperBLAST

C785_RS20555 / A0A2E7P978: 2-dehydro-3-deoxy-L-pentonate 4-dehydrogenase (EC 1.1.1.401) from Herbaspirillum sp.

38% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 13 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory