Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocapsa aurea KYG (GCF_000746085.1)

Found 15 curated entries in PaperBLAST's database that match '4.1.2.48' as complete word(s).

These curated entries have 10 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylocapsa aurea KYG, or try another query

glyA DL86_RS11505 WP_036261508.1: serine hydroxymethyltransferase
is similar to:
PaperBLAST

P0A825: low-specificity L-threonine aldolase (EC 4.1.2.48) from Escherichia coli

59% id,
98% cov

GLYA_HYDTT / D3DKC4: Serine hydroxymethyltransferase; SHMT; Serine methylase; L-threonine/L-allo-threonine aldolase; EC 2.1.2.1; EC 4.1.2.48 from Hydrogenobacter thermophilus

56% id,
95% cov

DL86_RS03570 WP_036258293.1: low specificity L-threonine aldolase
is similar to:
PaperBLAST

A0T1V9: low-specificity L-threonine aldolase (EC 4.1.2.48) from Sinorhizobium arboris

48% id,
100% cov

O50584: low-specificity L-threonine aldolase (EC 4.1.2.48) from Pseudomonas sp.

41% id,
89% cov

ltaA / O07051: L-allo-threonine aldolase subunit (EC 4.1.2.48) from Aeromonas jandaei

31% id,
98% cov

hemA DL86_RS17185 WP_036264181.1: 5-aminolevulinate synthase
is similar to:
PaperBLAST

THA2_ARATH / Q9FPH3: Probable low-specificity L-threonine aldolase 2; Threonine aldolase 2; EC 4.1.2.48 from Arabidopsis thaliana

22% id,
83% cov

THA1_ARATH / Q8RXU4: Low-specificity L-threonine aldolase 1; Threonine aldolase 1; EC 4.1.2.48 from Arabidopsis thaliana

20% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory