Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylocapsa aurea KYG (GCF_000746085.1)

Found 22 curated entries in PaperBLAST's database that match 'argininosuccinate lyase' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Methylocapsa aurea KYG, or try another query

argH DL86_RS17270 WP_036264204.1: argininosuccinate lyase
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans

54% id,
99% cov

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

52% id,
99% cov

1tj7B / P11447: Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli

48% id,
98% cov

More...

DL86_RS03230 WP_051952578.1: lyase family protein
is similar to:
PaperBLAST

6ienB / P9WPY7: Substrate/product bound argininosuccinate lyase from mycobacterium tuberculosis

32% id,
97% cov

P9WPY7: argininosuccinate lyase (EC 4.3.2.1) from Mycobacterium tuberculosis

32% id,
98% cov

2e9fB / Q5SLL0: Crystal structure of t.Th.Hb8 argininosuccinate lyase complexed with l-arginine

31% id,
98% cov

More...

DL86_RS03225 WP_245276227.1: adenylosuccinate lyase family protein
is similar to:
PaperBLAST

1tj7B / P11447: Structure determination and refinement at 2.44 a resolution of argininosuccinate lyase from e. Coli

24% id,
91% cov

ArgH / b3960: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli
argH / P11447: argininosuccinate lyase (EC 4.3.2.1) from Escherichia coli

24% id,
90% cov

argH / CAA88927.2: argininosuccinate lyase from Streptomyces clavuligerus

31% id,
45% cov

purB DL86_RS06040 WP_036259337.1: adenylosuccinate lyase
is similar to:
PaperBLAST

Q8DVX5: argininosuccinate lyase (EC 4.3.2.1) from Streptococcus mutans

26% id,
76% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

20266-21891 (frame +1) on NZ_KN050805.1 Methylocapsa aurea strain KYG DL86DRAFT_scaffold00005.5, whole genome shotgun sequence
is similar to:
PaperBLAST

argH / BAC65282.1: argininosuccinate lyase from Burkholderia multivorans
Also see hits to annotated proteins above

53% id,
100% cov

ARG4: argininosuccinate lyase from Candida albicans
Also see hits to annotated proteins above

42% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory