Curated BLAST for Genomes

 

Curated BLAST

Searching in Litchfieldella xinjiangensis TRM 0175 (GCF_000759345.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.8' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Litchfieldella xinjiangensis TRM 0175, or try another query

JH15_RS11025 WP_043530172.1: cytochrome c
is similar to:
PaperBLAST

D2SZY5: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

44% id,
91% cov

C9K502: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

44% id,
91% cov

C7G3B8: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

43% id,
91% cov

JH15_RS09990 WP_043529837.1: membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
is similar to:
PaperBLAST

QEDH_PSEAE / Q9Z4J7: Quinoprotein ethanol dehydrogenase; QEDH; Quinoprotein alcohol dehydrogenase (cytochrome c); Quinoprotein alcohol dehydrogenase (cytochrome c550); EC 1.1.2.8 from Pseudomonas aeruginosa
exaA / Q9Z4J7: alcohol dehydrogenase (cytochrome c550) monomer (EC 1.1.2.8) from Pseudomonas aeruginosa
Q9Z4J7: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Pseudomonas aeruginosa

28% id,
60% cov

B1N7J0: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Pseudomonas putida

26% id,
63% cov

PS417_17460: Quinoprotein ethanol dehydrogenase QedA (EC 1.1.2.8) from Pseudomonas simiae

26% id,
60% cov

More...

JH15_RS12590 WP_043530923.1: PQQ-binding-like beta-propeller repeat protein
is similar to:
PaperBLAST

D2SZY4: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

27% id,
45% cov

C9K501: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

27% id,
45% cov

C7G3B7: alcohol dehydrogenase (cytochrome c) (EC 1.1.2.8) from Acetobacter pasteurianus

27% id,
45% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory