Curated BLAST for Genomes

 

Curated BLAST

Searching in Thermoactinomyces daqus H-18 (GCF_000763315.1)

Found 20 curated entries in PaperBLAST's database that match '1.13.11.5' as complete word(s).

These curated entries have 17 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Thermoactinomyces daqus H-18, or try another query

JG50_RS0100670 WP_033099184.1: homogentisate 1,2-dioxygenase
is similar to:
PaperBLAST

SO1963: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Shewanella oneidensis

48% id,
100% cov

Psest_3513: Homogentisate 1,2-dioxygenase (EC 1.13.11.5) from Pseudomonas stutzeri

37% id,
97% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory