Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium beibuense F44-8 (GCF_000769915.1)

Found 17 curated entries in PaperBLAST's database that match '4.1.2.14' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Flavobacterium beibuense F44-8, or try another query

Q763_RS08015 Q763_08190 WP_035132993.1: ketohydroxyglutarate aldolase
is similar to:
PaperBLAST

CA265_RS19860: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Pedobacter sp.

41% id,
100% cov

A0A0B6VQ18: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14) from Flavobacterium sp.

38% id,
95% cov

ALKD_BACSU / P50846: 2-dehydro-3-deoxy-phosphogluconate aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG aldolase; EC 4.1.2.14 from Bacillus subtilis

32% id,
92% cov

More...

dapA Q763_RS07675 Q763_07845 WP_035132869.1: 4-hydroxy-tetrahydrodipicolinate synthase
is similar to:
PaperBLAST

O54288: 2-dehydro-3-deoxy-phosphogluconate aldolase (EC 4.1.2.14); 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6 phosphogalactonate aldolase (EC 4.1.2.55) from Saccharolobus solfataricus

27% id,
77% cov

KDGA_PICTO / Q6KZI8: 2-dehydro-3-deoxy-D-gluconate/2-dehydro-3-deoxy-phosphogluconate aldolase; 2-dehydro-3-deoxy-galactonate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase; EC 4.1.2.14; EC 4.1.2.51; EC 4.1.2.-; EC 4.1.2.21 from Picrophilus torridus

28% id,
73% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory