Curated BLAST for Genomes

 

Curated BLAST

Searching in Flavobacterium beibuense F44-8 (GCF_000769915.1)

Found 8 curated entries in PaperBLAST's database that match '4.3.1.9' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Flavobacterium beibuense F44-8, or try another query

trxB Q763_RS01195 Q763_01215 WP_035130203.1: thioredoxin-disulfide reductase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

48% id,
98% cov

Q763_RS11605 Q763_11850 WP_035134440.1: NAD(P)/FAD-dependent oxidoreductase
is similar to:
PaperBLAST

GLCAL_PSEFL / Q93HX6: Glucosaminate ammonia-lyase; D-glucosaminate dehydratase alpha-subunit; GlcNA-DH alpha subunit; GlcNADH-alpha; EC 4.3.1.9 from Pseudomonas fluorescens
Q93HX6: glucosaminate ammonia-lyase (EC 4.3.1.9) from Pseudomonas fluorescens

25% id,
87% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory