Curated BLAST for Genomes

 

Curated BLAST

Searching in Frischella perrara PEB0191 (GCF_000807275.1)

Found 52 curated entries in PaperBLAST's database that match '1.5.5.2' as complete word(s).

These curated entries have 43 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Frischella perrara PEB0191, or try another query

mnmG FPB0191_RS11600 FPB0191_02337 WP_039106337.1: tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

26% id,
32% cov

lpdA FPB0191_RS07785 FPB0191_01575 WP_039105151.1: dihydrolipoyl dehydrogenase
is similar to:
PaperBLAST

Q76M76: proline dehydrogenase (EC 1.5.5.2) from Thermococcus profundus

50% id,
8% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory