Curated BLAST for Genomes

 

Curated BLAST

Searching in Frischella perrara PEB0191 (GCF_000807275.1)

Found 37 curated entries in PaperBLAST's database that match '3.5.99.6' as complete word(s).

These curated entries have 30 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Frischella perrara PEB0191, or try another query

nagB FPB0191_RS00155 FPB0191_00032 WP_039103138.1: glucosamine-6-phosphate deaminase
is similar to:
PaperBLAST

NAGB_ECO57 / P0A760: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
NAGB_ECOLI / P0A759: Glucosamine-6-phosphate deaminase; GlcN6P deaminase; GNPDA; Glucosamine-6-phosphate isomerase; EC 3.5.99.6 from Escherichia coli
GlmD / b0678: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli
nagB / PDB|1CD5: GlcN6P deaminase; EC 3.5.99.6 from Escherichia coli
nagB / P0A759: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Escherichia coli

68% id,
99% cov

U5LXR4: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

63% id,
92% cov

E1C878: glucosamine-6-phosphate deaminase (EC 3.5.99.6) from Gallus gallus

59% id,
94% cov

More...

glmS FPB0191_RS00250 FPB0191_00051 WP_039103171.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

30% id,
95% cov

PGA1_c27890: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Phaeobacter inhibens

29% id,
97% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp.

29% id,
98% cov

More...

FPB0191_RS07535 FPB0191_01525 WP_039105082.1: SIS domain-containing protein
is similar to:
PaperBLAST

SO3506: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella oneidensis

25% id,
94% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp.

25% id,
94% cov

Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella amazonensis

23% id,
94% cov

More...

murQ FPB0191_RS07255 FPB0191_01470 WP_039105006.1: N-acetylmuramic acid 6-phosphate etherase
is similar to:
PaperBLAST

Sama_0945: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella amazonensis

19% id,
62% cov

Shewana3_3113: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Shewanella sp.

23% id,
35% cov

Ga0059261_1644: Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) from Sphingomonas koreensis

30% id,
16% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory