Curated BLAST for Genomes

 

Curated BLAST

Searching in Frischella perrara PEB0191 (GCF_000807275.1)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Frischella perrara PEB0191, or try another query

galE FPB0191_RS03585 FPB0191_00728 WP_039104092.1: UDP-glucose 4-epimerase GalE
is similar to:
PaperBLAST

GALE_ECOLI / P09147: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Escherichia coli
GalD / b0759: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
galE / P09147: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli

62% id,
100% cov

A0A0H2URG4: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Streptococcus pneumoniae

60% id,
100% cov

GALE_HAEIN / P24325: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Haemophilus influenzae

59% id,
100% cov

More...

pseB FPB0191_RS04330 FPB0191_00881 WP_039104322.1: UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
is similar to:
PaperBLAST

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

41% id,
96% cov

V5RBP5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Acinetobacter baumannii

42% id,
94% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

28% id,
66% cov

More...

rfaD FPB0191_RS01985 FPB0191_00403 WP_039103631.1: ADP-glyceromanno-heptose 6-epimerase
is similar to:
PaperBLAST

A3MUJ4: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrobaculum calidifontis

26% id,
98% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

26% id,
98% cov

F6DEY6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Thermus thermophilus

30% id,
81% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory