Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium tyrobutyricum FAM22553 (GCF_000816635.1)

Found 10 curated entries in PaperBLAST's database that match '4.2.1.6' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Clostridium tyrobutyricum FAM22553, or try another query

ilvD PN53_RS01900 WP_039651789.1: dihydroxy-acid dehydratase
is similar to:
PaperBLAST

ARAD_RHILW / B5ZZ34: L-arabinonate dehydratase; ArDHT; D-fuconate dehydratase; Galactonate dehydratase; L-arabonate dehydratase; EC 4.2.1.25; EC 4.2.1.67; EC 4.2.1.6 from Rhizobium leguminosarum

35% id,
94% cov

PN53_RS02415 WP_017895599.1: dipeptide epimerase
is similar to:
PaperBLAST

BPHYT_RS16405: galactonate dehydratase [EC: 4.2.1.6] from Burkholderia phytofirmans

28% id,
87% cov

G3Y8T6: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

25% id,
89% cov

G3YE52: galactonate dehydratase (EC 4.2.1.6) from Aspergillus niger

28% id,
77% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory