Curated BLAST for Genomes

 

Curated BLAST

Searching in Clostridium tyrobutyricum FAM22553 (GCF_000816635.1)

Found 90 curated entries in PaperBLAST's database that match '5.3.1.1' as complete word(s).

These curated entries have 57 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Clostridium tyrobutyricum FAM22553, or try another query

tpiA PN53_RS08180 WP_039652730.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens

70% id,
100% cov

P35144: triose-phosphate isomerase (EC 5.3.1.1) from Priestia megaterium

57% id,
99% cov

TPIS_GEOSE / P00943: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Geobacillus stearothermophilus
P00943: triose-phosphate isomerase (EC 5.3.1.1) from Geobacillus stearothermophilus

57% id,
98% cov

More...

tpiA PN53_RS04220 WP_017894859.1: triose-phosphate isomerase
is similar to:
PaperBLAST

TPIS_CLOPE / Q8XKU1: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Clostridium perfringens

39% id,
100% cov

TPIS2_LISIN / Q92EU4: Triosephosphate isomerase 2; TIM 2; TPI 2; Triose-phosphate isomerase 2; EC 5.3.1.1 from Listeria innocua

39% id,
98% cov

TPIS_STAAR / Q6GIL6: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Staphylococcus aureus
Q6GIL6: triose-phosphate isomerase (EC 5.3.1.1) from Staphylococcus aureus

37% id,
99% cov

More...

PN53_RS08175 WP_039652727.1: phosphoglycerate kinase
is similar to:
PaperBLAST

PGKT_THEMA / P36204: Bifunctional PGK/TIM; EC 2.7.2.3; EC 5.3.1.1 from Thermotoga maritima
pgk / P36204: Pgk (EC 2.7.2.3; EC 5.3.1.1) from Thermotoga maritima
P36204: triose-phosphate isomerase (EC 5.3.1.1) from Thermotoga maritima

60% id,
61% cov

pdxS PN53_RS13215 WP_017752622.1: pyridoxal 5'-phosphate synthase lyase subunit PdxS
is similar to:
PaperBLAST

B6YUE5: triose-phosphate isomerase (EC 5.3.1.1) from Thermococcus onnurineus

23% id,
91% cov

TPIS_METBR / O74025: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Methanobacterium bryantii
O74025: triose-phosphate isomerase (EC 5.3.1.1) from Methanobacterium bryantii

40% id,
21% cov

TPIS_PYRWO / P62003: Triosephosphate isomerase; TIM; TPI; Triose-phosphate isomerase; EC 5.3.1.1 from Pyrococcus woesei
tpiA / P62003: triose phosphate isomerase subunit (EC 5.3.1.1) from Pyrococcus woesei
P62002: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus furiosus
P62003: triose-phosphate isomerase (EC 5.3.1.1) from Pyrococcus woesei

41% id,
18% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory