Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 76 curated entries in PaperBLAST's database that match '1.1.1.27' as complete word(s).

These curated entries have 63 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

SUTH_RS15425 SUTH_03098 WP_041100480.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lutA / O07020: iron-sulfur oxidase subunit used in L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

46% id,
100% cov

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

34% id,
92% cov

SUTH_RS15420 SUTH_03097 WP_041100478.1: LutB/LldF family L-lactate oxidation iron-sulfur protein
is similar to:
PaperBLAST

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

42% id,
98% cov

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

40% id,
99% cov

SUTH_RS15415 SUTH_03096 WP_197539602.1: lactate utilization protein C
is similar to:
PaperBLAST

lutC / O32259: component of an iron-sulfur oxidase for L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

30% id,
97% cov

Q5F884: L-lactate dehydrogenase (subunit 2/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

33% id,
69% cov

lutB / O07021: component of an iron-sulfur oxidase linked to L-lactate utilization (EC 1.1.1.27) from Bacillus subtilis

32% id,
21% cov

glcF SUTH_RS14595 SUTH_02931 WP_041100276.1: glycolate oxidase subunit GlcF
is similar to:
PaperBLAST

Q5F885: L-lactate dehydrogenase (subunit 3/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

26% id,
81% cov

SUTH_RS12995 SUTH_02609 WP_197539588.1: iron-containing alcohol dehydrogenase
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

35% id,
46% cov

SUTH_RS14665 SUTH_02945 WP_052473864.1: L-lactate dehydrogenase
is similar to:
PaperBLAST

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

31% id,
44% cov

Q44467: L-lactate dehydrogenase (EC 1.1.1.27); L-lactate oxidase (EC 1.1.3.2) from Aerococcus viridans

37% id,
35% cov

SUTH_RS16825 SUTH_03379 WP_084207472.1: iron-containing alcohol dehydrogenase family protein
is similar to:
PaperBLAST

I3VSF1: alcohol dehydrogenase (EC 1.1.1.1); L-lactate dehydrogenase (EC 1.1.1.27); acetaldehyde dehydrogenase (acetylating) (EC 1.2.1.10) from Thermoanaerobacterium saccharolyticum

25% id,
32% cov

SUTH_RS12515 SUTH_02511 WP_041099663.1: 4Fe-4S dicluster domain-containing protein
is similar to:
PaperBLAST

Q5F883: L-lactate dehydrogenase (subunit 1/3) (EC 1.1.1.27) from Neisseria gonorrhoeae

30% id,
19% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory