Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 17 curated entries in PaperBLAST's database that match '1.1.2.3' as complete word(s).

These curated entries have 15 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

SUTH_RS14665 SUTH_02945 WP_052473864.1: L-lactate dehydrogenase
is similar to:
PaperBLAST

PS417_19130: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas simiae

50% id,
99% cov

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

48% id,
99% cov

lldD: L-lactate dehydrogenase [cytochrome]; EC 1.1.2.3 from Escherichia coli

47% id,
95% cov

More...

SUTH_RS15425 SUTH_03098 WP_041100480.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

lldE / Q8EGS4: L-lactate dehydrogenase LldE subunit (EC 1.1.2.3) from Shewanella oneidensis

37% id,
98% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

34% id,
33% cov

SUTH_RS15420 SUTH_03097 WP_041100478.1: LutB/LldF family L-lactate oxidation iron-sulfur protein
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

40% id,
88% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

38% id,
63% cov

SUTH_RS15415 SUTH_03096 WP_197539602.1: lactate utilization protein C
is similar to:
PaperBLAST

lldF / Q8EGS6: L-lactate dehydrogenase LldF subunit (EC 1.1.2.3) from Shewanella oneidensis

26% id,
100% cov

DVU_3032 / Q726S4: quinone-dependent L-lactate dehydrogenase small subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

37% id,
67% cov

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

29% id,
14% cov

rsxC SUTH_RS07045 SUTH_01419 WP_041098179.1: electron transport complex subunit RsxC
is similar to:
PaperBLAST

lldG / Q8EGS5: L-lactate dehydrogenase iron-sulfur cluster-binding protein LldF (EC 1.1.2.3) from Shewanella oneidensis

23% id,
58% cov

guaB SUTH_RS09780 SUTH_01971 WP_041098909.1: IMP dehydrogenase
is similar to:
PaperBLAST

Q9HV37: L-lactate dehydrogenase (cytochrome) (EC 1.1.2.3) from Pseudomonas aeruginosa

32% id,
28% cov

SUTH_RS06270 SUTH_01262 WP_041101815.1: (Fe-S)-binding protein
is similar to:
PaperBLAST

DVU_3033 / Q726S3: quinone-dependent L-lactate dehydrogenase large subunit (EC 1.1.2.3) from Desulfovibrio vulgaris

30% id,
10% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory