Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 23 curated entries in PaperBLAST's database that match '1.3.8.4' as complete word(s).

These curated entries have 19 distinct sequences.

Running ublast with E ≤ 0.01

Found 17 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

SUTH_RS02630 SUTH_00533 WP_041096878.1: isovaleryl-CoA dehydrogenase
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 77% id,
99% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

 75% id,
98% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

 74% id,
99% cov

More...

SUTH_RS00425 SUTH_00088 WP_041096225.1: isovaleryl-CoA dehydrogenase
is similar to:		 PaperBLAST

AidB / b4187: putative acyl-CoA dehydrogenase AidB (EC 1.3.8.4) from Escherichia coli
AidB / P33224: isovaleryl-CoA dehydrogenase and DNA-binding transcriptional repressor (EC 1.3.8.4) from Escherichia coli

 50% id,
94% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

 26% id,
80% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 25% id,
83% cov

More...

SUTH_RS00215 SUTH_00046 WP_041096163.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 48% id,
93% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 45% id,
98% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 45% id,
98% cov

More...

SUTH_RS02660 SUTH_00539 WP_041096890.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 42% id,
98% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 39% id,
96% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 38% id,
97% cov

More...

SUTH_RS00430 SUTH_00089 WP_231851071.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

 39% id,
99% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

 37% id,
99% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 37% id,
99% cov

More...

SUTH_RS08235 SUTH_01658 WP_041098459.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

 36% id,
95% cov

Ac3H11_2991: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Acidovorax sp.

 35% id,
96% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

 35% id,
95% cov

More...

SUTH_RS07590 SUTH_01526 WP_041098322.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 36% id,
96% cov

Sama_1362: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella amazonensis

 35% id,
92% cov

Pf6N2E2_2191: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 33% id,
94% cov

More...

SUTH_RS14310 SUTH_02874 WP_041100191.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 33% id,
99% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 34% id,
94% cov

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

 34% id,
94% cov

More...

SUTH_RS11645 SUTH_02339 WP_041099426.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 29% id,
97% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

 28% id,
97% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 28% id,
97% cov

More...

SUTH_RS11550 SUTH_02320 WP_041099403.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 30% id,
95% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 28% id,
98% cov

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 29% id,
95% cov

More...

SUTH_RS11555 SUTH_02321 WP_041099405.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 29% id,
96% cov

IVD_ARATH / Q9SWG0: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; EC 1.3.8.4 from Arabidopsis thaliana
Q9SWG0: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Arabidopsis thaliana

 27% id,
98% cov

IVD_SOLTU / Q9FS87: Isovaleryl-CoA dehydrogenase, mitochondrial; IVD; Isovaleryl-CoA dehydrogenase 2; St-IVD2; EC 1.3.8.4 from Solanum tuberosum
Q9FS87: isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Solanum tuberosum

 26% id,
99% cov

More...

SUTH_RS11640 SUTH_02338 WP_041099424.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 27% id,
98% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 27% id,
98% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

 26% id,
98% cov

More...

SUTH_RS06135 SUTH_01234 WP_041097918.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

acdH / Q9XCG5: acyl-CoA dehydrogenase subunit (EC 1.3.8.4; EC 1.3.8.5) from Streptomyces avermitilis

 28% id,
98% cov

liuA / Q9I296: isovaleryl-CoA dehydrogenase subunit (EC 1.3.8.4) from Pseudomonas aeruginosa

 26% id,
99% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 26% id,
99% cov

More...

SUTH_RS07400 SUTH_01488 WP_041098271.1: acyl-CoA dehydrogenase
is similar to:		 PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

 27% id,
98% cov

Pf6N2E2_2191: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 27% id,
99% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 27% id,
99% cov

More...

SUTH_RS11545 SUTH_02319 WP_041099402.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

 28% id,
88% cov

PS417_17015: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas simiae

 28% id,
88% cov

AO356_01580: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 28% id,
88% cov

More...

SUTH_RS05600 SUTH_01127 WP_041097728.1: acyl-CoA dehydrogenase family protein
is similar to:		 PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

 25% id,
97% cov

SM_b21121: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Sinorhizobium meliloti

 25% id,
97% cov

PGA1_c10280: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Phaeobacter inhibens

 24% id,
98% cov

More...

SUTH_RS07370 SUTH_01482 WP_041098260.1: acyl-CoA dehydrogenase C-terminal domain-containing protein
is similar to:		 PaperBLAST

Psest_1084: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas stutzeri

 25% id,
97% cov

Shewana3_1672: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Shewanella sp.

 26% id,
93% cov

AO353_20350: Isovaleryl-CoA dehydrogenase (EC 1.3.8.4) from Pseudomonas fluorescens

 24% id,
97% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 17 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory