Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

metH SUTH_RS17740 SUTH_03566 WP_041101157.1: methionine synthase
is similar to:
PaperBLAST

METH_ECOLI / P13009: Methionine synthase; 5-methyltetrahydrofolate--homocysteine methyltransferase; Methionine synthase, vitamin-B12-dependent; MS; EC 2.1.1.13 from Escherichia coli
MetH / b4019: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli
metH: methionine synthase; EC 2.1.1.13 from Escherichia coli
metH / P13009: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Escherichia coli

62% id,
99% cov

METH_RAT / Q9Z2Q4: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Rattus norvegicus
Q9Z2Q4: methionine synthase (EC 2.1.1.13) from Rattus norvegicus

54% id,
100% cov

METH_HUMAN / Q99707: Methionine synthase; MS; 5-methyltetrahydrofolate--homocysteine methyltransferase; Cobalamin-dependent methionine synthase; Vitamin-B12 dependent methionine synthase; EC 2.1.1.13 from Homo sapiens
MTR / Q99707: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Homo sapiens
Q99707: methionine synthase (EC 2.1.1.13) from Homo sapiens

54% id,
98% cov

More...

icmF SUTH_RS03085 SUTH_00621 WP_041096999.1: fused isobutyryl-CoA mutase/GTPase IcmF
is similar to:
PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

22% id,
39% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

31% id,
13% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

31% id,
13% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory