Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 13 curated entries in PaperBLAST's database that match '2.1.2.10' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

gcvT SUTH_RS05995 SUTH_01206 WP_041097872.1: glycine cleavage system aminomethyltransferase GcvT
is similar to:
PaperBLAST

GCST_ECOLI / P27248: Aminomethyltransferase; Glycine cleavage system T protein; EC 2.1.2.10 from Escherichia coli
GcvT / b2905: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli
gcvT: aminomethyltransferase; EC 2.1.2.10 from Escherichia coli
gcvT / P27248: aminomethyltransferase (EC 2.1.2.10) from Escherichia coli

55% id,
99% cov

BWI76_RS23880: Aminomethyltransferase (EC 2.1.2.10) from Klebsiella michiganensis

53% id,
100% cov

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

38% id,
97% cov

More...

SUTH_RS09210 SUTH_01853 WP_052473477.1: folate-binding protein YgfZ
is similar to:
PaperBLAST

Pf6N2E2_5556: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

25% id,
81% cov

PfGW456L13_1866: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas fluorescens

24% id,
81% cov

PS417_22370: Aminomethyltransferase (EC 2.1.2.10) from Pseudomonas simiae

22% id,
84% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory