Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 36 curated entries in PaperBLAST's database that match '2.3.3.9' as complete word(s).

These curated entries have 22 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

aceB SUTH_RS05370 SUTH_01082 WP_041097653.1: malate synthase A
is similar to:
PaperBLAST

BPHYT_RS12305: Malate synthase (EC 2.3.3.9) from Burkholderia phytofirmans

71% id,
98% cov

acuE: malate synthase; EC 2.3.3.9 from Emericella nidulans

52% id,
97% cov

Q5YLB8: malate synthase (EC 2.3.3.9) from Paracoccidioides brasiliensis

51% id,
98% cov

More...

aceA SUTH_RS05385 SUTH_01085 WP_041097659.1: isocitrate lyase
is similar to:
PaperBLAST

GCP_CAEEL / Q10663: Bifunctional glyoxylate cycle protein; Gex-3-interacting protein 7; EC 4.1.3.1; EC 2.3.3.9 from Caenorhabditis elegans

55% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory