Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 5 curated entries in PaperBLAST's database that match '2.6.1.66' as complete word(s).

These curated entries have 2 distinct sequences.

Running ublast with E ≤ 0.01

Found 2 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

SUTH_RS14945 SUTH_03001 WP_041100371.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

40% id,
99% cov

AVTA_ECOLI / P09053: Valine--pyruvate aminotransferase; Alanine--valine transaminase; Transaminase C; EC 2.6.1.66 from Escherichia coli
AvtA / b3572: valine—pyruvate aminotransferase (EC 2.6.1.66) from Escherichia coli
avtA / P09053: valine—pyruvate aminotransferase (EC 2.6.1.66) from Escherichia coli
P09053: valine-pyruvate transaminase (EC 2.6.1.66) from Escherichia coli

22% id,
81% cov

SUTH_RS15085 SUTH_03030 WP_041100392.1: pyridoxal phosphate-dependent aminotransferase
is similar to:
PaperBLAST

AVTA_MYCTU / P96847: Valine--pyruvate aminotransferase; Alanine--valine transaminase; EC 2.6.1.66 from Mycobacterium tuberculosis

28% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory