Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 5 curated entries in PaperBLAST's database that match '3.1.1.24' as complete word(s).

These curated entries have 4 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

pcaD SUTH_RS16040 SUTH_03224 WP_171817387.1: 3-oxoadipate enol-lactonase
is similar to:
PaperBLAST

pcaD / Q88N36: subunit of 3-oxoadipate enol-lactone hydrolase (EC 3.1.1.24) from Pseudomonas putida
Q88N36: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Pseudomonas putida

40% id,
97% cov

Q13KT2: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Paraburkholderia xenovorans

39% id,
97% cov

AO353_17230: Beta-ketoadipate enol-lactone hydrolase (EC 3.1.1.24) from Pseudomonas fluorescens

38% id,
95% cov

More...

SUTH_RS09965 SUTH_02008 WP_041098969.1: alpha/beta hydrolase
is similar to:
PaperBLAST

Q13KT2: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Paraburkholderia xenovorans

28% id,
97% cov

SUTH_RS05875 SUTH_01182 WP_041097814.1: alpha/beta fold hydrolase
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

30% id,
56% cov

Q13KT2: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Paraburkholderia xenovorans

31% id,
49% cov

pcaD / Q88N36: subunit of 3-oxoadipate enol-lactone hydrolase (EC 3.1.1.24) from Pseudomonas putida
Q88N36: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Pseudomonas putida

32% id,
40% cov

SUTH_RS10570 SUTH_02128 WP_052473842.1: alpha/beta hydrolase
is similar to:
PaperBLAST

Q13KT2: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Paraburkholderia xenovorans

35% id,
35% cov

SUTH_RS11595 SUTH_02329 WP_041099417.1: alpha/beta hydrolase
is similar to:
PaperBLAST

Q0SH24: 3-oxoadipate enol-lactonase (EC 3.1.1.24); 4-carboxymuconolactone decarboxylase (EC 4.1.1.44) from Rhodococcus jostii

31% id,
26% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

2189671-2190570 (frame -2) on NZ_AP012547.1 Sulfuritalea hydrogenivorans sk43H strain DSM 22779 chromosome, complete genome
is similar to:
PaperBLAST

pcaD / Q88N36: subunit of 3-oxoadipate enol-lactone hydrolase (EC 3.1.1.24) from Pseudomonas putida
Q88N36: 3-oxoadipate enol-lactonase (EC 3.1.1.24) from Pseudomonas putida
Also see hits to annotated proteins above

25% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory