Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 51 curated entries in PaperBLAST's database that match '3.1.3.3' as complete word(s).

These curated entries have 38 distinct sequences.

Running ublast with E ≤ 0.01

Found 7 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

thrH SUTH_RS01615 SUTH_00327 WP_041096573.1: bifunctional phosphoserine phosphatase/homoserine phosphotransferase ThrH
is similar to:
PaperBLAST

THRH_PSEAE / Q9I2Y2: Phosphoserine phosphatase ThrH; PSP; PSPase; EC 3.1.3.3 from Pseudomonas aeruginosa

61% id,
98% cov

THRH_PSESM / Q883R9: Phosphoserine phosphatase; PSP; PSPase; EC 3.1.3.3 from Pseudomonas syringae

59% id,
85% cov

SUTH_RS03500 SUTH_00703 WP_041097122.1: histidine phosphatase family protein
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

39% id,
86% cov

SUTH_RS07705 SUTH_01549 WP_041101959.1: histidine phosphatase family protein
is similar to:
PaperBLAST

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

35% id,
74% cov

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

28% id,
70% cov

SUTH_RS08490 SUTH_01711 WP_041098548.1: HAD-IA family hydrolase
is similar to:
PaperBLAST

SERB_WOLSU / Q7M7U5: Phosphoserine phosphatase; PSP; PSPase; O-phosphoserine phosphohydrolase; EC 3.1.3.3 from Wolinella succinogenes

27% id,
89% cov

SUTH_RS09885 SUTH_01992 WP_041098945.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

30% id,
63% cov

gpmA SUTH_RS03545 SUTH_00712 WP_041097135.1: 2,3-diphosphoglycerate-dependent phosphoglycerate mutase
is similar to:
PaperBLAST

PSPA_HYDTT / D3DFG8: Phosphoserine phosphatase 1; PSP 1; PSPase 1; Metal-independent phosphoserine phosphatase 1; iPSP1; O-phosphoserine phosphohydrolase 1; EC 3.1.3.3 from Hydrogenobacter thermophilus
D3DFG8: phosphoserine phosphatase (EC 3.1.3.3) from Hydrogenobacter thermophilus

32% id,
53% cov

SERCL_ARATH / F4KI56: Metal-independent phosphoserine phosphatase; iPSP; Phosphoglycerate mutase-like protein 3; EC 3.1.3.3 from Arabidopsis thaliana

38% id,
42% cov

SUTH_RS16735 SUTH_03362 WP_041100879.1: phosphoglycerate dehydrogenase
is similar to:
PaperBLAST

Echvi_2777: fused D-3-phosphoglycerate dehydrogenase / phosphoserine phosphatase (EC 1.1.1.95; EC 3.1.3.3) from Echinicola vietnamensis

29% id,
48% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 6 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory