Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 12 curated entries in PaperBLAST's database that match '3.5.4.19' as complete word(s).

These curated entries have 8 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

hisI SUTH_RS14125 SUTH_02838 WP_041100141.1: phosphoribosyl-AMP cyclohydrolase
is similar to:
PaperBLAST

HSERO_RS20310: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) from Herbaspirillum seropedicae

67% id,
75% cov

HIS3_METTH / O26347: Phosphoribosyl-AMP cyclohydrolase; PRA-CH; EC 3.5.4.19 from Methanothermobacter thermautotrophicus

60% id,
83% cov

Q8YH95: phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19) from Brucella melitensis

60% id,
74% cov

More...

hisD SUTH_RS14175 SUTH_02847 WP_041100155.1: histidinol dehydrogenase
is similar to:
PaperBLAST

HIS2_YEAST / P00815: Histidine biosynthesis trifunctional protein; EC 3.5.4.19; EC 3.6.1.31; EC 1.1.1.23 from Saccharomyces cerevisiae

36% id,
51% cov

SUTH_RS14120 SUTH_02837 WP_041100139.1: phosphoribosyl-ATP diphosphatase
is similar to:
PaperBLAST

HisE / b2026: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli
hisI / P06989: putative bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase (EC 3.5.4.19; EC 3.6.1.31) from Escherichia coli

41% id,
43% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory