Curated BLAST for Genomes

 

Curated BLAST

Searching in Sulfuritalea hydrogenivorans sk43H DSM 22779 (GCF_000828635.1)

Found 31 curated entries in PaperBLAST's database that match '4.3.1.19' as complete word(s).

These curated entries have 21 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Sulfuritalea hydrogenivorans sk43H DSM 22779, or try another query

ilvA SUTH_RS17910 SUTH_03598 WP_041101209.1: threonine ammonia-lyase, biosynthetic
is similar to:
PaperBLAST

ILVA_ECOLI / P04968: L-threonine dehydratase biosynthetic IlvA; Threonine deaminase; EC 4.3.1.19 from Escherichia coli
Ile / b3772: threonine deaminase (EC 4.3.1.19) from Escherichia coli
ilvA / P04968: threonine deaminase (EC 4.3.1.19) from Escherichia coli
P04968: threonine ammonia-lyase (EC 4.3.1.19) from Escherichia coli

55% id,
97% cov

TD1_SOLLC / A0FKE6: Threonine dehydratase 1 biosynthetic, chloroplastic; SlTD1; Threonine deaminase 1; EC 4.3.1.19 from Solanum lycopersicum

57% id,
82% cov

TD_SOLTU / P31212: Threonine dehydratase biosynthetic, chloroplastic; Threonine deaminase; EC 4.3.1.19 from Solanum tuberosum

46% id,
100% cov

More...

trpB SUTH_RS06470 SUTH_01304 WP_041098009.1: tryptophan synthase subunit beta
is similar to:
PaperBLAST

CCNA_03750: threonine deaminase (EC 4.3.1.19) from Caulobacter crescentus

26% id,
66% cov

Q04513: threonine ammonia-lyase (EC 4.3.1.19) from Corynebacterium glutamicum

24% id,
70% cov

TSAL_THEMA / Q9WYJ1: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine dehydratase; EC 4.3.1.19; EC 4.3.1.17 from Thermotoga maritima

26% id,
54% cov

More...

cysM SUTH_RS09825 SUTH_01980 WP_041098927.1: cysteine synthase CysM
is similar to:
PaperBLAST

TSAL_GEOSL / Q74FW6: L-threonine ammonia-lyase; L-serine ammonia-lyase; Threonine/serine ammonia-lyase; EC 4.3.1.19; EC 4.3.1.17 from Geobacter sulfurreducens
Q74FW6: threonine ammonia-lyase (EC 4.3.1.19) from Geobacter sulfurreducens

28% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory