Curated BLAST for Genomes

 

Curated BLAST

Searching in Jannaschia aquimarina GSW-M26 (GCF_000877395.1)

Found 6 curated entries in PaperBLAST's database that match '2.8.3.13' as complete word(s).

These curated entries have 5 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Jannaschia aquimarina GSW-M26, or try another query

jaqu_RS05760 jaqu_11590 WP_043917999.1: CoA transferase
is similar to:
PaperBLAST

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

58% id,
94% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

57% id,
93% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

56% id,
93% cov

More...

jaqu_RS12220 jaqu_24730 WP_043919274.1: CoA transferase
is similar to:
PaperBLAST

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

51% id,
94% cov

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

50% id,
95% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

47% id,
97% cov

More...

jaqu_RS05770 jaqu_11610 WP_043918001.1: CoA transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

38% id,
98% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

39% id,
95% cov

gcdG / Q88RH1: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas putida

37% id,
99% cov

More...

jaqu_RS09975 jaqu_20150 WP_043918831.1: CoA transferase
is similar to:
PaperBLAST

AO356_10845: succinyl-CoA-glutarate CoA-transferase (EC 2.8.3.13) from Pseudomonas fluorescens

35% id,
97% cov

caiB / Q7CXU0: succinate—lglutarate CoA-transferase (EC 2.8.3.13) from Agrobacterium fabrum

34% id,
98% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory