Curated BLAST for Genomes

 

Curated BLAST

Searching in Jannaschia aquimarina GSW-M26 (GCF_000877395.1)

Found 8 curated entries in PaperBLAST's database that match '5.5.1.1' as complete word(s).

These curated entries have 6 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Jannaschia aquimarina GSW-M26, or try another query

jaqu_RS13705 jaqu_27680 WP_043919559.1: mandelate racemase/muconate lactonizing enzyme family protein
is similar to:
PaperBLAST

C6YXG6: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

26% id,
91% cov

salC / Q4KPK2: muconate cycloisomerase I (EC 5.5.1.1; EC 5.5.1.7) from Pseudomonas reinekei
Q4KPK2: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas reinekei

24% id,
70% cov

PS417_23670: Muconate cycloisomerase (EC 5.5.1.1) from Pseudomonas simiae

25% id,
52% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory