Curated BLAST for Genomes

 

Curated BLAST

Searching in Jannaschia aquimarina GSW-M26 (GCF_000877395.1)

Found 44 curated entries in PaperBLAST's database that match '6.2.1.1' as complete word(s).

These curated entries have 32 distinct sequences.

Running ublast with E ≤ 0.01

Found 8 relevant proteins in Jannaschia aquimarina GSW-M26, or try another query

acs jaqu_RS18400 jaqu_37260 WP_043920483.1: acetate--CoA ligase
is similar to:		 PaperBLAST

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 64% id,
99% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 64% id,
99% cov

ACSA_ECOLI / P27550: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Escherichia coli
AcsA / b4069: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.1; EC 6.2.1.17) from Escherichia coli
acs / P27550: acetyl-CoA synthetase (AMP-forming) (EC 6.2.1.17; EC 6.2.1.1) from Escherichia coli

 63% id,
97% cov

More...

jaqu_RS00350 jaqu_00710 WP_043916943.1: AMP-binding protein
is similar to:		 PaperBLAST

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

 49% id,
99% cov

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

 49% id,
98% cov

CCL4 / M4IQQ5: isobutanoate/2-methylbutanoate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

 47% id,
97% cov

More...

jaqu_RS11285 jaqu_22820 WP_043919068.1: AMP-binding protein
is similar to:		 PaperBLAST

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus

 51% id,
91% cov

ACSS3_HUMAN / Q9H6R3: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Homo sapiens

 51% id,
91% cov

ACSA_SALTY / Q8ZKF6: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Salmonella typhimurium

 39% id,
96% cov

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jaqu_RS19350 jaqu_39210 WP_316243076.1: AMP-binding protein
is similar to:		 PaperBLAST

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

 30% id,
93% cov

Q2XNL6: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

 30% id,
87% cov

Q2I0L7: acetate-CoA ligase (EC 6.2.1.1) from Methanothermobacter thermautotrophicus

 29% id,
87% cov

More...

jaqu_RS03905 jaqu_07850 WP_043917615.1: malonyl-CoA synthase
is similar to:		 PaperBLAST

HBCL2_METS5 / A4YDR9: 4-hydroxybutyrate--CoA ligase 2; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; acyl-activating enzyme; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

 29% id,
89% cov

CCL2 / M4IRL4: isovalerate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

 28% id,
89% cov

HBCL1_METS5 / A4YDT1: 4-hydroxybutyrate--CoA ligase 1; Acetate--CoA ligase; Butyrate--CoA ligase; Propionate--CoA ligase; EC 6.2.1.40; EC 6.2.1.1; EC 6.2.1.2; EC 6.2.1.17 from Metallosphaera sedula

 26% id,
84% cov

More...

jaqu_RS03860 jaqu_07760 WP_043917607.1: acyl-CoA synthetase
is similar to:		 PaperBLAST

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 28% id,
90% cov

AO353_03060: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens

 27% id,
90% cov

ACSA_METTP / A0B8F1: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Methanothrix thermoacetophila
A0B8F1: acetate-CoA ligase (EC 6.2.1.1) from Methanothrix thermoacetophila

 29% id,
83% cov

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jaqu_RS01825 jaqu_03680 WP_043917235.1: class I adenylate-forming enzyme family protein
is similar to:		 PaperBLAST

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

 26% id,
94% cov

CCL3_HUMLU / M4IS88: Acetate--CoA ligase CCL3; HlCCL3; 2-methylbutanoate--CoA ligase CCL4; 2-methylpropanoate--CoA ligase CCL4; Butanoate--CoA ligase CCL3; Hexanoate--CoA ligase CCL3; Isovalerate--CoA ligase CCL3; Pentanoate--CoA ligase CCL3; Propionate--CoA ligase CCL3; EC 6.2.1.1; EC 6.2.1.-; EC 6.2.1.17 from Humulus lupulus

 26% id,
80% cov

ACSS3_HUMAN / Q9H6R3: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Homo sapiens

 21% id,
61% cov

More...

jaqu_RS14565 jaqu_29410 WP_043919727.1: AMP-binding protein
is similar to:		 PaperBLAST

AEE7_ARATH / Q8VZF1: Acetate/butyrate--CoA ligase AAE7, peroxisomal; AMP-binding protein 7; AtAMPBP7; Acetyl-CoA synthetase; Acyl-activating enzyme 7; Butyryl-CoA synthetase; Protein ACETATE NON-UTILIZING 1; EC 6.2.1.1; EC 6.2.1.2 from Arabidopsis thaliana

 24% id,
87% cov

CCL2 / M4IRL4: isovalerate--CoA ligase (EC 6.2.1.1) from Humulus lupulus

 24% id,
82% cov

ACSA_BACSU / P39062: Acetyl-coenzyme A synthetase; AcCoA synthetase; Acs; Acetate--CoA ligase; Acyl-activating enzyme; EC 6.2.1.1 from Bacillus subtilis

 22% id,
51% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 8 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

147291-149333 (frame -3) on NZ_JYFE01000041.1 Jannaschia aquimarina strain GSW-M26 jaqu_contig000041, whole genome shotgun sequence
is similar to:		 PaperBLAST

ACSS3_RAT / A0A0G2K047: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Rattus norvegicus
Also see hits to annotated proteins above

 50% id,
96% cov

ACSS3_HUMAN / Q9H6R3: Acyl-CoA synthetase short-chain family member 3, mitochondrial; Acetate--CoA ligase 3; Acyl-CoA synthetase short-chain family member 3; Propionate--CoA ligase; EC 6.2.1.1; EC 6.2.1.17 from Homo sapiens
Also see hits to annotated proteins above

 50% id,
95% cov

AO356_18695: Acetyl-coenzyme A synthetase (EC 6.2.1.1) from Pseudomonas fluorescens
Also see hits to annotated proteins above

 38% id,
100% cov

More...

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory