Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira microaerophila ASL8-2 (GCF_000934765.1)

Found 60 curated entries in PaperBLAST's database that match '5.1.3.2' as complete word(s).

These curated entries have 42 distinct sequences.

Running ublast with E ≤ 0.01

Found 11 relevant proteins in Thiomicrospira microaerophila ASL8-2, or try another query

galE NA59_RS04260 WP_044408447.1: UDP-glucose 4-epimerase GalE
is similar to:		 PaperBLAST

GALE_STRTR / P21977: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Streptococcus thermophilus
galE / P21977: UDP-glucose-4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus
P21977: UDP-glucose 4-epimerase (EC 5.1.3.2) from Streptococcus thermophilus

 48% id,
98% cov

GALE_LACHE / Q7WTB1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Lactobacillus helveticus

 45% id,
98% cov

GALE_ECOLI / P09147: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Escherichia coli
GalD / b0759: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli
galE / P09147: UDP-glucose 4-epimerase (EC 5.1.3.2) from Escherichia coli

 44% id,
99% cov

More...

pseB NA59_RS07300 WP_044410319.1: UDP-N-acetylglucosamine 4,6-dehydratase (inverting)
is similar to:		 PaperBLAST

V5RBP5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Acinetobacter baumannii

 44% id,
90% cov

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

 47% id,
80% cov

Q5D9E1: UDP-glucose 4-epimerase (EC 5.1.3.2) from Schistosoma japonicum

 22% id,
82% cov

More...

rfbB NA59_RS05640 WP_044409314.1: dTDP-glucose 4,6-dehydratase
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 31% id,
98% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 28% id,
98% cov

UGE2_ARATH / Q9T0A7: UDP-glucose 4-epimerase 2; AtUGE2; UDP-galactose 4-epimerase 2; EC 5.1.3.2 from Arabidopsis thaliana
Q9T0A7: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Arabidopsis thaliana

 29% id,
95% cov

More...

NA59_RS06655 WP_044409892.1: NAD-dependent 4,6-dehydratase LegB
is similar to:		 PaperBLAST

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 30% id,
97% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 29% id,
98% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 29% id,
98% cov

More...

NA59_RS04145 WP_044408394.1: nucleoside-diphosphate sugar epimerase/dehydratase
is similar to:		 PaperBLAST

V5RBP5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Acinetobacter baumannii

 33% id,
89% cov

CAPD_RICPR / Q9ZDJ5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Rickettsia prowazekii

 30% id,
98% cov

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 21% id,
92% cov

NA59_RS10810 WP_044412315.1: NAD-dependent epimerase
is similar to:		 PaperBLAST

UGE1_PEA / B0M3E8: Bifunctional UDP-glucose 4-epimerase and UDP-xylose 4-epimerase 1; UDP-D-xylose 4-epimerase; UDP-L-arabinose 4-epimerase; UDP-galactose 4-epimerase 1; UDP-glucose 4-epimerase 1; PsUGE1; EC 5.1.3.2; EC 5.1.3.5 from Pisum sativum
B0M3E8: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-arabinose 4-epimerase (EC 5.1.3.5) from Pisum sativum

 28% id,
97% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 27% id,
97% cov

Echvi_1472: UDP-glucose 4-epimerase (EC 5.1.3.2) from Echinicola vietnamensis

 27% id,
98% cov

More...

gmd NA59_RS04355 WP_044408485.1: GDP-mannose 4,6-dehydratase
is similar to:		 PaperBLAST

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 27% id,
97% cov

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 26% id,
95% cov

GALE_CAEEL / Q564Q1: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Caenorhabditis elegans

 24% id,
95% cov

NA59_RS04185 WP_044408414.1: NAD-dependent epimerase/dehydratase family protein
is similar to:		 PaperBLAST

galE1 / P9WN67: UDP-galactose/glucose 4-epimerase subunit (EC 5.1.3.7; EC 5.1.3.2) from Mycobacterium tuberculosis
P9WN67: UDP-glucose 4-epimerase (EC 5.1.3.2) from Mycobacterium tuberculosis

 27% id,
96% cov

GALE_MYCS2 / A0R5C5: UDP-glucose 4-epimerase; UDP-galactose 4-epimerase; Uridine diphosphate galactose 4-epimerase; EC 5.1.3.2 from Mycolicibacterium smegmatis

 26% id,
97% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 26% id,
69% cov

NA59_RS04350 WP_044408483.1: GDP-L-fucose synthase
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 24% id,
98% cov

F2NQX6: UDP-glucose 4-epimerase (EC 5.1.3.2) from Marinithermus hydrothermalis

 23% id,
99% cov

NA59_RS15670 WP_269763825.1: hypothetical protein
is similar to:		 PaperBLAST

GALE_DROME / Q9W0P5: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Drosophila melanogaster
Q9W0P5: UDP-glucose 4-epimerase (EC 5.1.3.2) from Drosophila melanogaster

 63% id,
12% cov

galE / P55180: UDP-glucose 4-epimerase (EC 5.1.3.7; EC 5.1.3.2) from Bacillus subtilis

 60% id,
12% cov

GALE_HUMAN / Q14376: UDP-glucose 4-epimerase; Galactowaldenase; UDP-N-acetylgalactosamine 4-epimerase; UDP-GalNAc 4-epimerase; UDP-N-acetylglucosamine 4-epimerase; UDP-GlcNAc 4-epimerase; UDP-galactose 4-epimerase; EC 5.1.3.2; EC 5.1.3.7 from Homo sapiens
GALE / Q14376: UDP-galactose 4-epimerase (EC 5.1.3.2; EC 5.1.3.7) from Homo sapiens
Q14376: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Homo sapiens

 61% id,
12% cov

More...

NA59_RS01350 WP_044406821.1: TIGR01777 family oxidoreductase
is similar to:		 PaperBLAST

Q9WYX9: UDP-glucose 4-epimerase (EC 5.1.3.2); UDP-N-acetylglucosamine 4-epimerase (EC 5.1.3.7) from Thermotoga maritima

 31% id,
17% cov

O73960: UDP-glucose 4-epimerase (EC 5.1.3.2) from Pyrococcus horikoshii

 33% id,
15% cov

GALE_NEIMC / P56986: UDP-glucose 4-epimerase; Galactowaldenase; UDP-galactose 4-epimerase; EC 5.1.3.2 from Neisseria meningitidis

 40% id,
13% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 10 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory