Curated BLAST for Genomes

 

Curated BLAST

Searching in Thiomicrospira microaerophila ASL8-2 (GCF_000934765.1)

Found 43 curated entries in PaperBLAST's database that match '5.3.1.4' as complete word(s).

These curated entries have 37 distinct sequences.

Running ublast with E ≤ 0.01

Found 1 relevant proteins in Thiomicrospira microaerophila ASL8-2, or try another query

NA59_RS08470 WP_044410960.1: KpsF/GutQ family sugar-phosphate isomerase
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis

45% id,
96% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 1 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

29606-30589 (frame -3) on NZ_JYNN01000022.1 Thiomicrospira microaerophila strain ASL8-2 NA59DRAFT_scaffold00020.20_C, whole genome shotgun sequence
is similar to:
PaperBLAST

Q3IG38: L-arabinose isomerase (EC 5.3.1.4) from Pseudoalteromonas haloplanktis
Also see hits to annotated proteins above

44% id,
98% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory