Curated BLAST for Genomes

 

Curated BLAST

Searching in Photobacterium gaetbulicola Gung47 (GCF_000940995.1)

Found 12 curated entries in PaperBLAST's database that match '4.3.1.1' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Photobacterium gaetbulicola Gung47, or try another query

aspA H744_RS09165 H744_2c0090 WP_044622067.1: aspartate ammonia-lyase
is similar to:
PaperBLAST

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

79% id,
99% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

57% id,
100% cov

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

57% id,
99% cov

More...

aspA H744_RS05950 H744_1c1200 WP_044621371.1: aspartate ammonia-lyase
is similar to:
PaperBLAST

ASPA_ECOLI / P0AC38: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Escherichia coli
AspA / b4139: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
aspA / P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli
P0AC38: aspartate ammonia-lyase (EC 4.3.1.1) from Escherichia coli

77% id,
99% cov

Q0PC50: aspartate ammonia-lyase (EC 4.3.1.1) from Campylobacter jejuni

56% id,
99% cov

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

56% id,
98% cov

More...

H744_RS05260 H744_1c1059 WP_044621268.1: class II fumarate hydratase
is similar to:
PaperBLAST

ASPA_PSEAE / Q9HTD7: Aspartate ammonia-lyase; Aspartase; PA-AspA; EC 4.3.1.1 from Pseudomonas aeruginosa
Q9HTD7: aspartate ammonia-lyase (EC 4.3.1.1) from Pseudomonas aeruginosa

42% id,
97% cov

ASPA_PSECO / P0DXC8: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas canavaninivorans

42% id,
97% cov

ASPA_PSEFL / P07346: Aspartate ammonia-lyase; Aspartase; EC 4.3.1.1 from Pseudomonas fluorescens

42% id,
96% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory