Curated BLAST for Genomes

 

Curated BLAST

Searching in Oleispira antarctica RB-8 (GCF_000967895.1)

Found 15 curated entries in PaperBLAST's database that match '2.6.1.96' as complete word(s).

These curated entries have 7 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Oleispira antarctica RB-8, or try another query

OLEAN_RS06545 OLEAN_C12950 WP_084687665.1: adenosylmethionine--8-amino-7-oxononanoate transaminase
is similar to:		 PaperBLAST

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

 28% id,
95% cov

GATP3_SOLLC / Q84P52: Gamma aminobutyrate transaminase 3, chloroplastic; Gamma-aminobutyrate transaminase isozyme 3; LeGABA-TP3; SlGABA-T3; EC 2.6.1.96 from Solanum lycopersicum
Q84P52: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

 29% id,
90% cov

GATP1_SOLLC / Q84P54: Gamma aminobutyrate transaminase 1, mitochondrial; Gamma-aminobutyrate transaminase isozyme 1; LeGABA-TP1; SlGABA-T1; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP1 / Q84P54: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P54: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

 28% id,
91% cov

More...

OLEAN_RS06405 OLEAN_C12700 WP_046008544.1: aspartate aminotransferase family protein
is similar to:		 PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

 26% id,
90% cov

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

 26% id,
86% cov

GATP1_ORYSJ / Q7XN11: Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa

 28% id,
80% cov

More...

OLEAN_RS03755 OLEAN_C07410 WP_052717833.1: aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
is similar to:		 PaperBLAST

GATP2_SOLLC / Q84P53: Gamma aminobutyrate transaminase 2; Gamma-aminobutyrate transaminase isozyme 2; LeGABA-TP2; SlGABA-T2; EC 2.6.1.96 from Solanum lycopersicum
GABA-TP2 / Q84P53: gamma aminobutyrate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Q84P53: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum

 30% id,
65% cov

GATP4_ORYSJ / Q6ZH29: Probable gamma-aminobutyrate transaminase 4; OsGABA-T; EC 2.6.1.96 from Oryza sativa
Q6ZH29: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

 28% id,
67% cov

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

 30% id,
63% cov

More...

OLEAN_RS01080 OLEAN_C02150 WP_046010708.1: glutamate-1-semialdehyde 2,1-aminomutase
is similar to:		 PaperBLAST

Q7XN12: 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Oryza sativa

 26% id,
73% cov

GATP1_ORYSJ / Q7XN11: Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa

 24% id,
74% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1404774-1406222 (frame +3) on NZ_FO203512.1 Oleispira antarctica strain RB-8, complete genome sequence
is similar to:		 PaperBLAST

GATP1_ORYSJ / Q7XN11: Gamma-aminobutyrate transaminase 1, mitochondrial; EC 2.6.1.96 from Oryza sativa
Also see hits to annotated proteins above

 28% id,
97% cov

GATP3_SOLLC / Q84P52: Gamma aminobutyrate transaminase 3, chloroplastic; Gamma-aminobutyrate transaminase isozyme 3; LeGABA-TP3; SlGABA-T3; EC 2.6.1.96 from Solanum lycopersicum
Q84P52: 4-aminobutyrate-2-oxoglutarate transaminase (EC 2.6.1.19); 4-aminobutyrate-pyruvate transaminase (EC 2.6.1.96) from Solanum lycopersicum
Also see hits to annotated proteins above

 29% id,
92% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory