Curated BLAST for Genomes

 

Curated BLAST

Searching in Oleispira antarctica RB-8 (GCF_000967895.1)

Found 16 curated entries in PaperBLAST's database that match '3.5.2.7' as complete word(s).

These curated entries have 14 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Oleispira antarctica RB-8, or try another query

OLEAN_RS07020 OLEAN_C13880 WP_046010915.1: TRZ/ATZ family hydrolase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

25% id,
47% cov

OLEAN_RS18885 OLEAN_C37260 WP_046010526.1: urease subunit alpha
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

35% id,
17% cov

hutI / O31200: imidazolonepropionase (EC 3.5.2.7) from Pseudomonas putida

42% id,
11% cov

OLEAN_RS16555 OLEAN_C32610 WP_046010142.1: guanine deaminase
is similar to:
PaperBLAST

SO0095: Imidazolonepropionase (EC 3.5.2.7) from Shewanella oneidensis

34% id,
15% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory