Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylotuvimicrobium alcaliphilum 20Z (GCF_000968535.2)

Found 39 curated entries in PaperBLAST's database that match '6.3.5.4' as complete word(s).

These curated entries have 33 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylotuvimicrobium alcaliphilum 20Z, or try another query

MEALZ_RS09330 MEALZ_1901 WP_014148380.1: XrtA/PEP-CTERM system amidotransferase
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

35% id,
96% cov

ASNH_MYCBO / P64248: Putative asparagine synthetase [glutamine-hydrolyzing]; EC 6.3.5.4 from Mycobacterium bovis

34% id,
92% cov

asnO / GI|1934835: asparagine synthase (glutamine-hydrolysing) 3; EC 6.3.5.4 from Bacillus subtilis

36% id,
69% cov

More...

MEALZ_RS13110 MEALZ_2686 WP_014149127.1: asparagine synthase-related protein
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

26% id,
80% cov

ASNB_ECOLI / P22106: Asparagine synthetase B [glutamine-hydrolyzing]; AS-B; EC 6.3.5.4 from Escherichia coli
AsnB / b0674: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38; EC 3.5.1.2) from Escherichia coli
asnB: asparagine synthetase B, glutamine-hydrolyzing; EC 6.3.5.4 from Escherichia coli
asnB / P22106: asparagine synthetase B (EC 6.3.5.4; EC 6.3.1.1; EC 3.5.1.38) from Escherichia coli

32% id,
13% cov

glmS MEALZ_RS01665 MEALZ_0338 WP_014146847.1: glutamine--fructose-6-phosphate transaminase (isomerizing)
is similar to:
PaperBLAST

asnB / GB|CAB15032.1: asparagine synthase (glutamine-hydrolysing) 1; EC 6.3.5.4 from Bacillus subtilis

21% id,
47% cov

Q9SP20: asparagine synthase (glutamine-hydrolysing) (EC 6.3.5.4) from Helianthus annuus

28% id,
24% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory