Curated BLAST for Genomes

 

Curated BLAST

Searching in Methylotuvimicrobium alcaliphilum 20Z (GCF_000968535.2)

Found 1 curated entries in PaperBLAST's database that match 'carbamoyl-phosphate synthase%small' as complete word(s).

These curated entries have 1 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Methylotuvimicrobium alcaliphilum 20Z, or try another query

carA MEALZ_RS08835 MEALZ_1804 WP_014148283.1: glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

43% id,
52% cov

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

33% id,
43% cov

guaA MEALZ_RS00520 MEALZ_0102 WP_014146624.1: glutamine-hydrolyzing GMP synthase
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

24% id,
53% cov

MEALZ_RS00770 MEALZ_0150 WP_014146665.1: aminodeoxychorismate/anthranilate synthase component II
is similar to:
PaperBLAST

carA / CAA68238.2: carbamoyl-phosphate synthase small subunit from Lactobacillus plantarum

31% id,
41% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 3 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory