Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitriliruptor alkaliphilus DSM 45188 (GCF_000969705.1)

Found 42 curated entries in PaperBLAST's database that match '1.1.1.95' as complete word(s).

These curated entries have 28 distinct sequences.

Running ublast with E ≤ 0.01

Found 12 relevant proteins in Nitriliruptor alkaliphilus DSM 45188, or try another query

serA NITAL_RS11360 WP_052666323.1: phosphoglycerate dehydrogenase
is similar to:		 PaperBLAST

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 52% id,
99% cov

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

 49% id,
99% cov

serA / GB|AAC83943.1: phosphoglycerate dehydrogenase; EC 1.1.1.95 from Bacillus subtilis

 41% id,
97% cov

More...

NITAL_RS07465 WP_052665472.1: zinc-dependent alcohol dehydrogenase
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 30% id,
80% cov

NITAL_RS11570 WP_052666358.1: D-isomer specific 2-hydroxyacid dehydrogenase family protein
is similar to:		 PaperBLAST

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 29% id,
80% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 28% id,
65% cov

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

 27% id,
52% cov

More...

NITAL_RS18420 WP_052669804.1: 2-hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

O58256: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pyrococcus horikoshii

 34% id,
67% cov

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 30% id,
74% cov

PGDH1 / A2DLU8: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Trichomonas vaginalis

 31% id,
68% cov

More...

NITAL_RS03665 WP_211262178.1: NAD(P)-dependent oxidoreductase
is similar to:		 PaperBLAST

Q972A9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Sulfurisphaera tokodaii

 28% id,
80% cov

H9JRZ9: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Bombyx mori

 30% id,
66% cov

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

 29% id,
58% cov

More...

NITAL_RS03750 WP_052664822.1: hydroxyacid dehydrogenase
is similar to:		 PaperBLAST

P9WNX3: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Mycobacterium tuberculosis

 32% id,
56% cov

Sama_3039: Phosphoglycerate dehydrogenase (EC 1.1.1.95) from Shewanella amazonensis

 31% id,
53% cov

Q9I6H5: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Pseudomonas aeruginosa

 29% id,
53% cov

More...

NITAL_RS08710 WP_245617724.1: alcohol dehydrogenase catalytic domain-containing protein
is similar to:		 PaperBLAST

cad / O25732: cinnamyl-alcohol dehydrogenase (EC 1.1.1.2; EC 1.1.1.95; EC 1.1.1.195) from Helicobacter pylori

 24% id,
59% cov

NITAL_RS01375 WP_211262143.1: nucleotide sugar dehydrogenase
is similar to:		 PaperBLAST

SERA_YEAST / P40054: D-3-phosphoglycerate dehydrogenase 1; 3-PGDH 1; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

 25% id,
43% cov

SER33_YEAST / P40510: D-3-phosphoglycerate dehydrogenase 2; 3-PGDH 2; 2-oxoglutarate reductase; EC 1.1.1.95; EC 1.1.1.399 from Saccharomyces cerevisiae

 25% id,
43% cov

NITAL_RS02640 WP_211262161.1: FAD-binding and (Fe-S)-binding domain-containing protein
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 25% id,
31% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 27% id,
13% cov

NITAL_RS17220 WP_211262474.1: prephenate dehydrogenase/arogenate dehydrogenase family protein
is similar to:		 PaperBLAST

Q9Z564: phosphoglycerate dehydrogenase (EC 1.1.1.95) from Streptomyces coelicolor

 31% id,
19% cov

NITAL_RS17750 WP_052667518.1: FAD-binding oxidoreductase
is similar to:		 PaperBLAST

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 29% id,
12% cov

NITAL_RS14260 WP_052669691.1: FAD-linked oxidase C-terminal domain-containing protein
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 26% id,
13% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae

 28% id,
12% cov

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans

 34% id,
8% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 12 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

558238-561345 (frame +1) on NZ_KQ033901.1 Nitriliruptor alkaliphilus DSM 45188 NitalDRAFT_Scaffold1.1, whole genome shotgun sequence
is similar to:		 PaperBLAST

BPHYT_RS03150: Phosphoglycerate dehydrogenase (EC:1.1.1.95) from Burkholderia phytofirmans
Also see hits to annotated proteins above

 24% id,
35% cov

HSERO_RS19500: Putative phosphoglycerate dehydrogenase (EC:1.1.1.95) from Herbaspirillum seropedicae
Also see hits to annotated proteins above

 26% id,
20% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory