Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitriliruptor alkaliphilus DSM 45188 (GCF_000969705.1)

Found 18 curated entries in PaperBLAST's database that match '2.1.1.13' as complete word(s).

These curated entries have 12 distinct sequences.

Running ublast with E ≤ 0.01

Found 5 relevant proteins in Nitriliruptor alkaliphilus DSM 45188, or try another query

NITAL_RS09160 WP_052665966.1: B12-binding domain-containing protein
is similar to:		 PaperBLAST

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 70% id,
97% cov

Q9WYA5: methionine synthase (EC 2.1.1.13) from Thermotoga maritima

 35% id,
28% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 36% id,
26% cov

More...

NITAL_RS09145 WP_052665963.1: dihydropteroate synthase
is similar to:		 PaperBLAST

PGA1_c16040: Methionine synthase component, pterin-binding domain (EC:2.1.1.13) from Phaeobacter inhibens

 59% id,
86% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 39% id,
37% cov

DvMF_0476: vitamin B12-dependent methionine synthase without a reactivation domain (EC 2.1.1.13) from Desulfovibrio vulgaris

 37% id,
37% cov

More...

NITAL_RS03045 WP_052664608.1: homocysteine S-methyltransferase family protein
is similar to:		 PaperBLAST

metH / Q8NQD1: cobalamin-dependent methionine synthase (EC 2.1.1.13) from Corynebacterium glutamicum

 50% id,
99% cov

PGA1_c13350: Methionine synthase component, B12 binding and B12-binding cap domains (EC:2.1.1.13) from Phaeobacter inhibens

 38% id,
91% cov

DVU1585: Methionine synthase (cobalamin-dependent) (EC 2.1.1.13) from Desulfovibrio vulgaris

 29% id,
98% cov

More...

NITAL_RS09140 WP_052665962.1: ASKHA domain-containing protein
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens

 51% id,
96% cov

NITAL_RS09155 WP_052665965.1: DUF1638 domain-containing protein
is similar to:		 PaperBLAST

PGA1_c13340: Accessory protein for co(II)balamin reduction (DUF1638) (EC:2.1.1.13) from Phaeobacter inhibens

 45% id,
79% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 5 reading frames. Except for 2 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1939259-1941466 (frame -3) on NZ_KQ033901.1 Nitriliruptor alkaliphilus DSM 45188 NitalDRAFT_Scaffold1.1, whole genome shotgun sequence
is similar to:		 PaperBLAST

PGA1_c15200: ATP-dependent reduction of co(II)balamin (RamA-like) (EC:2.1.1.13) from Phaeobacter inhibens
Also see hits to annotated proteins above

 50% id,
99% cov

1942570-1943307 (frame -1) on NZ_KQ033901.1 Nitriliruptor alkaliphilus DSM 45188 NitalDRAFT_Scaffold1.1, whole genome shotgun sequence
is similar to:		 PaperBLAST

PGA1_c13340: Accessory protein for co(II)balamin reduction (DUF1638) (EC:2.1.1.13) from Phaeobacter inhibens
Also see hits to annotated proteins above

 41% id,
96% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory