Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitriliruptor alkaliphilus DSM 45188 (GCF_000969705.1)

Found 19 curated entries in PaperBLAST's database that match '2.7.1.39' as complete word(s).

These curated entries have 13 distinct sequences.

Running ublast with E ≤ 0.01

Found 3 relevant proteins in Nitriliruptor alkaliphilus DSM 45188, or try another query

thrB NITAL_RS10525 WP_052666196.1: homoserine kinase
is similar to:
PaperBLAST

P07128: homoserine kinase (EC 2.7.1.39) from Corynebacterium glutamicum

34% id,
95% cov

Q4Q6Y2: homoserine kinase (EC 2.7.1.39) from Leishmania major

33% id,
94% cov

KHSE_METMP / Q6M0H5: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Methanococcus maripaludis

26% id,
86% cov

More...

NITAL_RS16685 WP_052667343.1: shikimate kinase
is similar to:
PaperBLAST

thrB / B8DPL9: homoserine kinase (EC 2.7.1.39) from Desulfovibrio vulgaris
DvMF_0971: Homoserine kinase (EC:2.7.1.39) from Desulfovibrio vulgaris

30% id,
79% cov

NITAL_RS09740 WP_211262310.1: 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
is similar to:
PaperBLAST

KHSE_ECOLI / P00547: Homoserine kinase; HK; HSK; EC 2.7.1.39 from Escherichia coli
ThrB / b0003: homoserine kinase (EC 2.7.1.39) from Escherichia coli
thrB / GB|BAB96580.2: homoserine kinase; EC 2.7.1.39 from Escherichia coli
thrB / P00547: homoserine kinase (EC 2.7.1.39) from Escherichia coli

27% id,
64% cov

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 2 reading frames. These were all redundant with annotated proteins.

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory