Curated BLAST for Genomes

 

Curated BLAST

Searching in Nitriliruptor alkaliphilus DSM 45188 (GCF_000969705.1)

Found 117 curated entries in PaperBLAST's database that match '6.3.1.2' as complete word(s).

These curated entries have 85 distinct sequences.

Running ublast with E ≤ 0.01

Found 4 relevant proteins in Nitriliruptor alkaliphilus DSM 45188, or try another query

glnA NITAL_RS19560 WP_052667859.1: type I glutamate--ammonia ligase
is similar to:
PaperBLAST

O85177: glutamine synthetase (EC 6.3.1.2) from Amycolatopsis mediterranei

64% id,
100% cov

GLN1B_STRCO / P15106: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Streptomyces coelicolor
P15106: glutamine synthetase (EC 6.3.1.2) from Streptomyces coelicolor

63% id,
100% cov

GLN1B_MYCBO / P0A591: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Mycobacterium bovis
GLN1B_MYCTU / P9WN39: Glutamine synthetase; GS; Glutamate--ammonia ligase; Glutamine synthetase I beta; GSI beta; EC 6.3.1.2 from Mycobacterium tuberculosis
P0A591: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis
P9WN39: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

63% id,
99% cov

More...

NITAL_RS19675 WP_052667893.1: glutamine synthetase family protein
is similar to:
PaperBLAST

P64246: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

62% id,
100% cov

GLNA1_METMA / Q8PY99: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Methanosarcina mazei
Q8PY99: glutamine synthetase (EC 6.3.1.2) from Methanosarcina mazei

51% id,
98% cov

C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.

48% id,
98% cov

More...

NITAL_RS05185 WP_083441239.1: glutamine synthetase family protein
is similar to:
PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis

46% id,
98% cov

C4L2T5: glutamine synthetase (EC 6.3.1.2) from Exiguobacterium sp.

31% id,
99% cov

P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima

31% id,
100% cov

More...

NITAL_RS22620 WP_052668560.1: glutamine synthetase
is similar to:
PaperBLAST

F2RM17: glutamine synthetase (EC 6.3.1.2) from Haloferax mediterranei

31% id,
99% cov

GLNA_THET8 / Q5SIP0: Glutamine synthetase; GS; Glutamate--ammonia ligase; EC 6.3.1.2 from Thermus thermophilus

30% id,
98% cov

P36205: glutamine synthetase (EC 6.3.1.2) from Thermotoga maritima

30% id,
100% cov

More...

The hits are sorted by %identity * %coverage (highest first)

Running ublast against the 6-frame translation. All reading frames of at least 30 codons are included.

Found hits to 4 reading frames. Except for 1 reading frames, these were redundant with annotated proteins. These remaining reading frames may be pseudogenes, omissions in the genome annotation, or N-terminal extensions of annotated proteins.

1101207-1102658 (frame -2) on NZ_KQ033901.1 Nitriliruptor alkaliphilus DSM 45188 NitalDRAFT_Scaffold1.1, whole genome shotgun sequence
is similar to:
PaperBLAST

O33342: glutamine synthetase (EC 6.3.1.2) from Mycobacterium tuberculosis
Also see hits to annotated proteins above

45% id,
100% cov

by Morgan Price, Arkin group
Lawrence Berkeley National Laboratory